Return to main results Retrieve Phyre Job Id

Job DescriptionP52696
Confidence99.78%DateThu Jan 5 12:06:00 GMT 2012
Rank23Aligned Residues202
% Identity17%Templated1ixca2
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   93......100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  GMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACR
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Template Sequence  GELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHXTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVH
Template Known Secondary structure 
SGGGGT
TT

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TT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   173......180.........190....... ..200.........210.........220.........230.........240.........250
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Query Sequence  RDHPLAKKQLVEWQELVGYKMIGVR. . SSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHA
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Template Sequence  RSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTXAGAASSIVPASVAA. I
Template Known Secondary structure  GGGGGGT
S
GGGGTT



SSSS
TT



SSTTS
BT.S
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   171........180.........190.........200.........210.........220.........230.........240........ .
 
   251........260.........270.........280.........290......
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Query Sequence  PYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTD
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Template Sequence  RWPDIAFARIVGTRVKVPISCIFRKEK. QPPILARFVEHVRRSAKD
Template Known Secondary structure 

TT

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   250.........260.........270...... ...280.........290....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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