Return to main results Retrieve Phyre Job Id

Job DescriptionP52696
Confidence34.31%DateThu Jan 5 12:06:00 GMT 2012
Rank368Aligned Residues31
% Identity16%Templated1bjaa_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Transcription factor MotA, activation domain
Resolution2.19

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70.........
Predicted Secondary structure 




Query SS confidence 






























Query Sequence  LFERTTRKVTLTKAGKRLLPEARELIKKFDE
Query Conservation 

 
      

  
  
   
         
Alig confidence 






























Template Conservation 









 



 

   

 
 
 


Template Sequence  LVEKSGDGLIITGEAQDIISNAATLYAQENA
Template Known Secondary structure  STT
T
Template Predicted Secondary structure 











Template SS confidence 






























   61........70.........80.........90.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions