Job Description P52696 Confidence 99.34% Date Thu Jan 5 12:06:00 GMT 2012 Rank 37 Aligned Residues 180 % Identity 17% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	T	L	A	C	I	P	T	A	V	F	Y	F	L	P	L	A	I	G	K	F	N	E	L	Y	P	N	I	K	V	R	I	L	E	Q	G	T	N	N	C	M	E	S	V	L	C	N	E	S	D	F	G	I	N	M	N	N	V	T	N	S	S	I	D	F	T	P	L	V	N	E	P	F	V	L	A	C	R	R
Query Conservation
Alig confidence																													.																															.	.
Template Conservation																													.																															.	.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	.	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	.	.	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V
Template Known Secondary structure													T	T	T									T	T	S			.										G	G	G							T	T	S		S					S	S		.	.		S	S	S																T
Template Predicted Secondary structure																													.																															.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	P	L	A	K	K	Q	L	V	E	W	Q	E	L	V	G	Y	K	M	I	G	V	R	S	S	S	G	N	R	L	L	I	E	Q	Q	L	A	D	K	P	W	K	L	D	W	F	Y	E	V	R	H	L	S	T	S	L	G	L	V	E	A	G	L	G	I	S	A	L	P	G	L	A	M	P	H	A	P	Y	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																																																														.
Template Conservation												.	.	.	.	.	.	.	.																																																														.
Template Sequence		D	Y	Q	F	Q	P	G	E	P	V	.	.	.	.	.	.	.	.	P	L	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	.
Template Known Secondary structure		T					S	S	S			.	.	.	.	.	.	.	.						S	S	S														T	T										S	S										T	T	S		B					G	G	G			T	T			.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																																														.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	I	G	I	P	L	V	E	P	V	I	R	R	T	L	G	I	I	R	R	K	D	A	V	L	S	P	A	A	E	R	F
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		V	L	G	E	T	E	G	L	P	G	L	P	E	T	R	Y	V	L	C	K	D	K	Q	C	D	.	N	E	L	A	L	A	I
Template Known Secondary structure					G	G	G	T															S				.
Template Predicted Secondary structure																											.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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