Job Description P52696 Confidence 99.62% Date Thu Jan 5 12:06:00 GMT 2012 Rank 34 Aligned Residues 206 % Identity 13% Template c3mz1D_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021 Resolution 1.88 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	G	M	V	T	L	A	C	I	P	T	A	V	F	Y	F	L	P	L	A	I	G	K	F	N	E	L	Y	P	N	I	K	V	R	I	L	E	Q	G	T	N	N	C	M	E	S	V	L	C	N	E	S	D	F	G	I	N	M	N	N	V	T	N	S	S	I	D	F	T	P	L	V	N	E	P	F	V	L	A
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		P	K	G	R	L	R	V	E	T	A	S	A	F	A	N	L	V	I	I	P	A	L	P	E	F	H	K	K	Y	P	D	I	Q	I	D	L	G	V	S	D	R	T	I	D	.	.	.	Y	L	A	E	N	V	D	C	A	I	R	A	G	T	L	T	D	Q	S	L	I	A	R	R	I	T	E	X	K	F	V	A	C
Template Known Secondary structure																		T													T	T												T	T	.	.	.				T	T								S					T	T	S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		C	R	R	D	H	P	L	A	K	K	Q	L	V	E	W	Q	E	L	V	G	Y	K	M	I	G	V	.	.	.	.	R	S	S	S	G	N	R	L	L	I	E	Q	Q	L	A	D	K	P	W	K	L	D	W	F	Y	E	V	R	H	L	S	T	S	L	G	L	V	E	A	G	L	G	I	S	A	L	P	G	L	A
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.
Template Conservation
Template Sequence		A	S	R	D	F	L	E	R	H	P	V	P	Q	H	P	S	D	L	E	K	N	C	Y	V	V	G	Y	F	L	P	K	T	G	Q	Q	X	P	F	H	F	R	R	G	N	E	E	I	E	V	S	G	R	Y	T	X	A	A	N	E	S	T	T	Y	L	A	A	A	R	A	G	L	G	V	I	Q	A	P	L	F	X
Template Known Secondary structure										S				S	S	G	G	G	G	G	T	T	S								T	T	T	T										T	T														S	S										T	T			B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		247	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		M	P	H	A	P	Y	S	S	.	I	I	G	I	P	L	V	E	P	V	I	R	R	T	L	G	I	I	R	R	K	D	A	V	L	S	P	A	A	E	R	F	F	A	L	L	I	N	L	W	T	D	D	K	D
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	R	E	D	L	R	N	G	T	X	V	P	V	L	P	D	W	Q	V	E	P	X	P	I	Y	L	V	Y	P	P	N	R	H	L	S	S	R	L	R	V	F	A	D	W	V	V	K	V	X	A	Q	S	Q	N
Template Known Secondary structure									T	S						T	T		B												G	G	G	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions