Job Description P52696 Confidence 99.82% Date Thu Jan 5 12:06:00 GMT 2012 Rank 17 Aligned Residues 203 % Identity 20% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	M	V	T	L	A	C	I	P	T	A	V	F	Y	F	L	P	L	A	I	G	K	F	N	E	L	Y	P	N	I	K	V	R	I	L	E	Q	G	T	N	N	C	M	E	S	V	L	C	N	E	S	D	F	G	I	N	M	N	N	V	T	N	S	S	I	D	F	T	P	L	V	N	E	P	F	V	L	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	Y	L	L	P	K	L	I	V	S	L	R	R	T	A	P	K	X	P	L	X	L	E	E	N	Y	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	A	E	P	F	Q	E	P	G	I	V	T	E	P	L	Y	D	E	P	F	F	V	I	V
Template Known Secondary structure											T	T	T																	T	T																			T	T	S	S	S						S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	D	H	P	L	A	K	K	Q	L	V	E	W	Q	E	L	V	G	Y	K	M	I	G	V	R	S	S	S	G	N	R	L	L	I	E	Q	Q	L	A	D	K	P	W	K	L	D	W	F	Y	E	V	R	H	L	S	T	S	L	G	L	V	E	A	G	L	G	I	S	A	L	P	G	L	A	M	P	H	A	P
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		P	K	G	H	S	F	E	E	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	.	.	.	.	.	.	.	T	N	T	L	Q	G	S	S	I	N	T	I	R	H	X	V	A	S	G	L	A	I	S	V	L	P	A	T	A	L	T	E	N	D
Template Known Secondary structure			T	T		G	G	G	G		S	S			S	S	G	G	G	G	S							T	T									T	T		.	.	.	.	.	.	.							S	S										T	T	S							G	G	G			G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	S	I	I	G	I	P	L	V	E	P	V	I	R	R	T	L	G	I	I	R	R	K	D	A	V	L	S	P	A	A	E	R	F	F	A	L	L	I	N	L	W	T	D	D	K	D	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	X	L	F	S	I	I	P	F	E	G	T	P	P	S	R	R	V	V	L	A	Y	R	R	N	F	V	R	P	K	A	L	S	A	X	K	A	A	I	X	Q	S	Q	L	H	G	V	S	F	I
Template Known Secondary structure		G	G	T							S	S	S												T	T																T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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