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Job DescriptionP52696
Confidence60.37%DateThu Jan 5 12:06:00 GMT 2012
Rank287Aligned Residues205
% Identity12%Templatec3hn0A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130.........140.........150.........160.........170...
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Query Sequence  MVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRR
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Template Sequence  VIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPXIN. . . . . . AANLYNKGIKIKLAG
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   25....30.........40.........50.........60.........70.........80... ......90........
 
   174.....180.........190.........200.........210.........220.........230....... ..240.........250
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Query Sequence  DHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGL. . . GISALPGLAMPHA
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Template Sequence  CPIWGTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALR
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   99100.........110.........120.........130.........140.........150.........160.........170........
 
   251... .....260.........270...... ...280.........290.........300....
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Query Sequence  PYSS. IIGIPLVEPVIRRTLGIIRRKD. . . AVLSPAAERFFALLINLWTDDKDNLWTN
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Template Sequence  KDSSLRITADLNHLTDNDTLGFAQTAVVYTPTXEKYRIAFEDALRASCQKAVRYPKET
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   179180.........190.........200.........210.........220.........230......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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