Job Description P52696 Confidence 22.34% Date Thu Jan 5 12:06:00 GMT 2012 Rank 422 Aligned Residues 206 % Identity 7% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	V	T	L	A	C	I	P	T	A	V	F	Y	F	L	P	L	A	I	G	K	F	N	E	L	Y	P	N	I	K	V	R	I	L	E	Q	G	T	N	N	C	M	E	S	V	L	C	N	E	S	D	F	G	I	N	M	N	N	V	T	N	S	S	I	D	F	T	P	L	V	N	E	P	F	V	L	A	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P
Template Known Secondary structure										T	T									T							T	T	T									S	S	S	S									T	S		S																		T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	H	P	L	A	K	K	Q	L	V	E	W	Q	E	L	V	G	.	Y	K	M	I	G	V	R	S	S	S	G	N	R	L	L	I	E	Q	Q	L	A	D	K	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	D	W	F	Y	E	V	R	H	L	S	T	S	L	G
Query Conservation																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	P	L	G	L	Y	P	G	K	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R
Template Known Secondary structure		B								S	S				G	G	G			T	T								S														T	T	S	S				T	T			G	G	G			G	G	G					T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		L	V	E	A	G	L	G	I	S	A	L	P	G	L	A	M	P	H	A	P	Y	S	S	I	I	G	I	P	L	V	E	P	V	I	R	R	T	L	G	I	I	R	R	K	D	A	V	L	S	P	A	A	E	R	F	F	A	L	L	.	.	.	.	.	I	N	L	W	T	D	D	K	D	N
Query Conservation																																																													.	.	.	.	.
Alig confidence																														.	.																														.	.	.	.	.
Template Conservation																														.	.
Template Sequence		S	R	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	.	.	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H	K	R	F	E	G
Template Known Secondary structure			T	T	T	S	S												T	T			G	G	G		S			.	.					T	T								G	G	G	T	T											T	T	S											S	T	T
Template Predicted Secondary structure																														.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions