Job Description P52696 Confidence 91.20% Date Thu Jan 5 12:06:00 GMT 2012 Rank 184 Aligned Residues 161 % Identity 11% Template c1zvvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Resolution 2.98 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	H	E	L	S	S	M	K	A	F	V	I	L	A	E	S	S	S	F	N	N	A	A	K	L	L	N	I	T	Q	P	A	L	T	R	R	I	K	K	M	E	E	D	L	H	V	Q	L	F	E	R	T	T	R	K	V	T	L	T	K	A	G	K	R	L	L	P	E	A	R	E	L	I	K	K	F	D	E	T
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	V	T	I	Y	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	E	A	S	V	S	M	A	T	V	S	R	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	P	N	V	K	P	S	T	R	K	K	V	L	E	T	I	E	R	L	G	Y	R	P	N	A	V
Template Known Secondary structure				S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S		S																T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.																.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		L	F	N	I	R	D	M	N	A	Y	H	R	G	M	V	T	L	A	C	I	P	T	A	V	F	Y	F	L	P	L	A	I	G	K	F	N	E	L	Y	P	N	I	K	V	R	I	L	E	Q	.	.	.	G	T	N	N	C	M	E	S	V	L	C	N	E	S	D	F	G	I	N	M	N	N	V	T	N	S	S	I
Query Conservation																																																			.	.	.
Alig confidence																																																			.	.	.
Template Conservation
Template Sequence		A	R	G	L	A	S	K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	S	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	Q	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	E	E	H
Template Known Secondary structure								T			S							S		T	T	S																	T	T									T	T																T		S							S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	T	P	L	V	N	E	P	F	V	L	A	C	R	R	D	H	P	L	A	K	K	Q	L	V	E	W	Q	E	L	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	I	P	S	V	T	I	D	Y	E	Q	A
Template Known Secondary structure						T	T		S	S						S				T	T			S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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