 |
Job Description | P0ABH4 | Confidence | 2.68% | Date | Thu Jan 5 11:15:30 GMT 2012 |
Rank | 18 | Aligned Residues | 94 |
% Identity | 16% | Template | d2e74b1 |
SCOP info | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
| a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
| a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
|
Resolution | 3.00 |
|
 |
  |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | V | I | W | L | S | F | L | I | A | L | L | L | Q | I | M | P | W | P | D | N | L | I | V | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
R | P | N | W | V | L | L | I | L | L | Y | W | I | L | A | L | P | H | R | V | N | V | G | T | G | F | V | M | G | A | I | L | D | L | I | S | G | S | T | L | G | V | R | V | L | A |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|   |   |
|
|
|
|
|   |
|
|   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
Template Sequence |   |
V | V | I | M | G | T | F | A | C | I | V | A | L | S | V | L | D | P | A | M | V | G | E | P | A | D | P | F | A | T | P | L | E | I | L | P | E | W | Y | L | Y | P | V | F | Q | I | L | R | S | V | P | N | K | L | L | G | V | L | L | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | S | V | P | L | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
|
|
|
|
| T | T |
|
|
| S | S |
|
|
|
| G | G | G |  |  |  |  |  |  |  |  | S |
| S |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | I | I | A | Y | L | V | A | . |
L | K | Y | Q | L | F | R | N | L | A | L | W | Q | Q | A | L | V | V | M | L | L | S | L | V | V | D | I | I |
Query Conservation |   |
  |   |
|
|   |
|
|   |   | . |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|
|   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|
|
|
Template Sequence |   |
L | I | L | V | P | F | I | E | N | V | N | K | F | Q | N | P | F | R | R | P | V | A | T | T | I | F | L | F | G | T | L | V | T | I | W | L | G | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | G | G | G | S |
|
|
| S | S | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|