Return to main results Retrieve Phyre Job Id

Job DescriptionP18335
Confidence100.00%DateThu Jan 5 11:36:49 GMT 2012
Rank6Aligned Residues397
% Identity35%Templated2byla1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.15

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  IEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFT
Query Conservation                        
       
    
 

   

         


  
 
  
                
Alig confidence 
















.





























































Template Conservation 
                .    
       
  
 
 

   

         

   
 
  
                
Template Sequence  PTSDDIFEREYKYGAHN. AHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFY
Template Known Secondary structure 

S
S
.



S

BTTT

SST
TT
BT
TT




TTS
Template Predicted Secondary structure 





.






























Template SS confidence 















































































   38.40.........50.... .....60.........70.........80.........90.........100.........110......
 
   83......90.........100.........110.........120...... ...130.........140.........150.........160
Predicted Secondary structure 







..



















Query SS confidence 











































. .

































Query Sequence  NEPALRLGRKLIEATFAERVVFMNSGTEANETAFKLARHYACVR. . HSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
Query Conservation        

  
    
        


 
   

  
       ..       

      

                 
Alig confidence 











































..

































Template Conservation       

   
    
        


 
   

  
                

      

                 
Template Sequence  NNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG
Template Known Secondary structure 
SST
SSSTT


TT

TT




STT


TT
Template Predicted Secondary structure 






























Template SS confidence 















































































   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   161........170.........180.... .....190.........200.........210.........220.........230.........
Predicted Secondary structure 














.






























Query SS confidence 























.






















































Query Sequence  FGPKPADIIHVPFNDLHAVKAVMD. DHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLF
Query Conservation                
   
     .     



      
        
  
  
    
  

 

   
 
  
   
Alig confidence 























.






















































Template Conservation                
   
   
     



 


    
        
  
  
       

 


  
 

 
   
Template Sequence  FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL
Template Known Secondary structure  S
S

TT
TT
TSTT
SSBTTTTSB


TTT

TTTTTTTTSSSS
Template Predicted Secondary structure 













































Template SS confidence 















































































   197..200.........210.........220.........230.........240.........250.........260.........270......
 
   240.........250.........260. ........270.........280.........290.........300.........310........
Predicted Secondary structure 









.











Query SS confidence 





















.
























































Query Sequence  AYMHYGVTPDILTSAKALGGGF. PISAMLTTAEIASAFHPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRF
Query Conservation           

 
 

 
  
 .                      
         
                        
Alig confidence 





















.
























































Template Conservation           

   

    
                        
        
 
 
                    
Template Sequence  AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL
Template Known Secondary structure  GGGGGT


S
GGGGTTSS


TTS
TTSS

SSTT
TT
Template Predicted Secondary structure 
















Template SS confidence 















































































   277..280.........290.........300.........310.........320.........330.........340.........350......
 
   319320.........330.........340.........350.........360.........370.........380.........390........
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  VDHLQKIDQQYDVFSDIRGMGLLIGAELKPQYKGRARDFLYAGAEAGVMVLNAGPDVMRFAPSLVVEDADIDEGMQRFAH
Query Conservation     
            
   
    
            
   
   

   
 
   


      
 
 

  
  
  
Alig confidence 






..






































































Template Conservation     
   ..       
   
    
         
  
   
   

   
     

       
   

     
  
Template Sequence  RNELMKL. . PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK
Template Known Secondary structure  TS..
TTTTT


SS

TT
TT


TT

Template Predicted Secondary structure  ..



























Template SS confidence 















































































   357..360... ......370.........380.........390.........400.........410.........420.........430....
 
   399400..
Predicted Secondary structure 
Query SS confidence 



Query Sequence  AVAK
Query Conservation 

  
Alig confidence 



Template Conservation 

  
Template Sequence  TILS
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 



   435...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions