Job Description P18335 Confidence 100.00% Date Thu Jan 5 11:36:49 GMT 2012 Rank 41 Aligned Residues 361 % Identity 18% Template d2bwna1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.1

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.							.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.																								.
Query SS confidence																																.	.	.	.	.	.																								.
Query Sequence		T	A	I	T	R	A	T	F	D	E	V	I	L	P	I	Y	A	P	A	E	F	I	P	V	K	G	Q	G	S	R	.	.	.	.	.	.	I	W	D	Q	Q	G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	.	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	W	H	I	S
Query Conservation																																.	.	.	.	.	.																								.
Alig confidence																				.	.	.	.									.	.	.	.	.	.															.	.	.							.
Template Conservation																				.	.	.	.																													.	.	.
Template Sequence		D	K	A	I	Q	K	L	H	D	E	G	R	Y	R	T	F	I	D	.	.	.	.	I	E	R	E	K	G	A	F	P	K	A	Q	W	N	R	P	D	G	G	K	Q	D	I	T	V	W	C	G	.	.	.	N	D	Y	L	G	M	G	Q	H	P	V	V	L	A	A	M	H	E	A	L	E	A	V	G	A	G	S
Template Known Secondary structure											T	T								.	.	.	.					T	T	S	T	T							T	T	S									S		.	.	.	S		T	T	S	G	G	G																	S
Template Predicted Secondary structure																				.	.	.	.																													.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		N	V	F	.	.	.	.	.	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	F	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.
Template Sequence		G	G	T	R	N	I	S	G	T	T	A	Y	H	R	R	L	E	A	E	I	A	G	L	H	Q	K	E	A	A	L	V	F	S	S	A	Y	N	A	N	D	A	T	L	S	T	L	R	V	L	.	.	.	.	.	.	.	F	P	G	L	I	I	Y	S	D	S	L	N	H	A	S	M	I	E	G	I	K	R	N	A
Template Known Secondary structure			S	B	T	T	T	B																	T	T		S						S																	.	.	.	.	.	.	.	S	T	T							T	T												S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	.	.	.	.	D	D	H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q
Query Conservation																																.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																						.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		G	P	.	.	.	.	.	.	.	.	.	.	.	.	K	R	I	F	R	H	N	D	V	A	H	L	R	E	L	I	A	A	D	D	P	A	A	P	K	L	I	A	F	E	S	V	Y	S	M	D	G	D	F	G	P	.	.	.	.	I	K	E	I	C	D	I	A	E	E	F	G	A	L	T	Y	I	D	E	V	H
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.						T	T												S		T	T	S								S	B		T	T	T			B			.	.	.	.												T								T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		154	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure			.																													.																															.
Query SS confidence			.																													.																															.
Query Sequence		C	.	G	M	G	R	T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	.	G	G	F	P	I	S	A	M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	.	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E
Query Conservation			.																													.																															.
Alig confidence			.																													.																															.
Template Conservation
Template Sequence		A	V	G	M	Y	G	P	R	G	A	G	V	A	E	R	D	G	L	M	H	R	I	D	I	F	N	G	T	L	A	A	Y	G	V	F	G	G	Y	I	A	A	S	A	R	M	V	D	A	V	R	S	Y	A	P	G	F	I	F	S	T	S	L	P	P	A	I	A	A	G	A	Q	A	S	I	A	F	L	K	T	A
Template Known Secondary structure		T	T	T	T	S	S	T	T	S								T		G	G	G		S											S																								T	S	B																		T	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.								.	.	.	.	.	.	.
Predicted Secondary structure																																																								.												.	.	.	.	.	.	.
Query SS confidence																																																								.												.	.	.	.	.	.	.
Query Sequence		V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	M	G	L	L	I	G	A	E	L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	.	G	A	E	A	G	V	M	V	L	N	A	.	.	.	.	.	.	.	G	P	D	V	M	R	F
Query Conservation																																																								.												.	.	.	.	.	.	.
Alig confidence																													.													.	.													.												.	.	.	.	.	.	.
Template Conservation																													.													.	.
Template Sequence		E	G	Q	K	L	R	D	A	Q	Q	M	H	A	K	V	L	K	M	R	L	K	A	L	G	M	P	I	.	I	D	H	G	S	H	I	V	P	V	V	I	.	.	G	D	P	V	H	T	K	A	V	S	D	M	L	L	S	D	Y	G	V	Y	V	Q	P	I	N	F	P	T	V	P	R	G	T	E	R	L	R	F
Template Known Secondary structure																									T			B	.				S	S	S							.	.																										T	T	T	S		T	T
Template Predicted Secondary structure																													.													.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A	H	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	S	P	V	H	D	L	K	Q	I	D	G	L	V	H	A	M	D	L	L
Template Known Secondary structure					T	T	S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions