Return to main results Retrieve Phyre Job Id

Job DescriptionP18335
Confidence99.95%DateThu Jan 5 11:36:49 GMT 2012
Rank105Aligned Residues329
% Identity12%Templated1d2fa_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70... ......80.........90........ .100.........110.........120.........130....
Predicted Secondary structure 
.











....










Query SS confidence 













.
























. . . .



































Query Sequence  HPALVNALKTQGET. LWHISNVFTNEPALRLGRKLIEATF. . . . AERVVFMNSGTEANETAFKLARHYACVRHSPFKTKI
Query Conservation   
 
  
       .               

  
    
....        


 
   

  
              
Alig confidence 













.
























....



















........







Template Conservation 
  
  
   
       
       

 


               
  
 
 
  
      ........    

 
Template Sequence  APCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ. . . . . . . . WSETGEGV
Template Known Secondary structure 
TT






S

S




GGGS
........SS
TT
Template Predicted Secondary structure 


















........



Template SS confidence 















































































   43......50.........60.........70.........80.........90.........100...... ...110....
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  IAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTAATPEFLQGLRE
Query Conservation 
      

                               
   
          



      
        
  
  
Alig confidence 





























.....












































Template Conservation 
   
            
            .....                              
        
  
  
Template Sequence  VIHTPAYDAFYKAIEGNQRTVMPVALEKQA. . . . . DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD
Template Known Secondary structure  S

TT


S.....SS

TSTTSS
TTT




TT
Template Predicted Secondary structure 











.....

























Template SS confidence 















































































   115....120.........130.........140.... .....150.........160.........170.........180.........
 
   215....220.........230....... ..240.........250........ .260.........270..... ....280........
Predicted Secondary structure 













...








.






..







Query SS confidence 






















. . .




















.
















. .












Query Sequence  LCDQHQALLVFDEVQCGMGRTGD. . . LFAYMHYGVTPDILTSAKALG. GGFPISAMLTTAEIASA. . FHPGSHGSTYGGN
Query Conservation 
    
  

 

   
 
  
 ...           

 
 

 
 . 
               ..        
    
Alig confidence 






















...




















.
















..












Template Conservation          

 
                            
 

     


 
                          
Template Sequence  LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP
Template Known Secondary structure  TT

TTTT
B
SSS



GGGT

SS
ST
GGG


STTS


S
Template Predicted Secondary structure 


































Template SS confidence 















































































   190.........200.........210.........220.........230.........240.........250.........260.........
 
   289290.........300.........310.........320.........330.........340.........350.........360.... ...
Predicted Secondary structure 















.
Query SS confidence 











































































.


Query Sequence  PLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAELKPQYKGRARDFLYAGAEA. GVM
Query Conservation       
                           
            
   
    
            
   
   .

 
Alig confidence 











































































.


Template Conservation        
                                         
         
             
    

 
Template Sequence  SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA
Template Known Secondary structure 


SS





SB
S
GGG


TT
Template Predicted Secondary structure 























Template SS confidence 















































































   270.........280.........290.........300.........310.........320.........330.........340.........
 
   368.370. ........380.........390.........400...
Predicted Secondary structure 
......







Query SS confidence 



. . . . . .































Query Sequence  VLNA. . . . . . GPDVMRFAPSLVVEDADIDEGMQRFAHAVAKV
Query Conservation    
 ......
   


      
 
 

  
  
  

  
Alig confidence 



......






..






















Template Conservation 
 

  
       


..
       
  

  
  

   
Template Sequence  IMPGYTYGEEGRGFVRL. . NAGCPRSKLEKGVAGLINAIRAV
Template Known Secondary structure 
GGGG
GGGTT..

S
Template Predicted Secondary structure 






..


Template SS confidence 









































   350.........360...... ...370.........380.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions