Job Description P18335 Confidence 99.95% Date Thu Jan 5 11:36:49 GMT 2012 Rank 108 Aligned Residues 340 % Identity 12% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																				.	.	.																									.	.	.	.
Query SS confidence																																				.	.	.																									.	.	.	.
Query Sequence		G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	.	.	.	W	H	I	S	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	F	.	.	.	.	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E
Query Conservation																																				.	.	.																									.	.	.	.
Alig confidence																		.	.	.																.	.	.																									.	.	.	.
Template Conservation																		.	.	.
Template Sequence		G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	.	.	.	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F
Template Known Secondary structure		T										S			S			.	.	.															T	G	G	G	S				T	T																							G	G	G					S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	.	.	.	.	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A
Query Conservation																						.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.					.	.	.	.																								.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Sequence		V	S	F	L	V	A	N	R	.	.	.	.	.	.	.	.	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	.	.	.	.	.	.	S	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q	T	G	Q	F	C	S
Template Known Secondary structure								T	T	.	.	.	.	.	.	.	.	S		T	T		S								S													T					.	.	.	.	.	.				G	G	G	G		T	T											T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.									.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.										.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.																							.
Query Sequence		V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	.	.	.	.	.	.	.	.	.	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	.	G
Query Conservation																																																	.	.	.	.	.	.	.	.	.																							.
Alig confidence													.																																				.	.	.	.	.	.	.	.	.																							.
Template Conservation													.
Template Sequence		I	I	Y	S	N	P	N	N	P	T	W	.	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A
Template Known Secondary structure						S	S		T	T	T		.																		T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T		S												S		G
Template Predicted Secondary structure													.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	P	I	S	A	M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R
Template Known Secondary structure		G	G															B		G	G	G					S		S	B							T	T							S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																																									.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																																									.	.	.	.	.	.
Query Sequence		H	L	Q	K	I	D	Q	Q	Y	D	V	F	.	.	.	.	.	.	.	S	D	I	R	G	M	G	L	L	I	G	A	E	L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	G	.	.	.	.	.	.	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A
Query Conservation														.	.	.	.	.	.	.																																									.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.															.	.	.																								.	.	.	.	.	.											.
Template Conservation																																			.	.	.																																								.
Template Sequence		I	X	K	K	X	F	L	D	N	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	.	.	.	K	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S	K	R	N	E	A	X	R	I	C	T	S	L	.	L	P	E	S
Template Known Secondary structure									T	T	T				S	S				T	T					S	S	S							.	.	.	T	T													T	T						S	T	T	T	T				T	T							S	S	.	S		G	G
Template Predicted Secondary structure																																			.	.	.																																								.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	E	G	M	Q	R	F	A	H	A	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	P	D	L	E	K	R	L	Q	X	L	N	A	E
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions