Job Description P18335 Confidence 99.97% Date Thu Jan 5 11:36:49 GMT 2012 Rank 60 Aligned Residues 349 % Identity 13% Template c3fdbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution Resolution 1.99 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		K	G	Q	G	S	R	I	W	D	Q	Q	G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	W	H	I	S	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	.	.	.	.	T	F	A	E	R	V	V	F	M
Query Conservation																																																																					.	.	.	.
Alig confidence																				.	.										.																																						.	.	.	.
Template Conservation																				.	.										.
Template Sequence		R	A	R	N	T	X	K	W	T	R	Y	G	Q	G	V	L	P	L	.	.	W	V	A	E	S	D	F	S	T	.	C	P	A	V	L	Q	A	I	T	D	A	V	Q	R	E	A	F	G	Y	Q	P	D	G	S	L	L	S	Q	A	T	A	E	F	Y	A	D	R	Y	G	Y	Q	A	R	P	E	W	I	F	P	I
Template Known Secondary structure				T							S	S		T	T	S				.	.		S	S				S			.														T	T			S	S			S	S																					G	G	G
Template Predicted Secondary structure																				.	.										.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	V	V	R	G	L	Y	I	A	I	.	.	.	.	.	.	.	.	D	H	F	T	P	A	Q	S	K	V	I	V	P	T	P	A	Y	P	P	F	F	H	L	L	S	A	T	Q	.	.	.	.	.	.	.	.	.	.	R	E	G	I	F	I	D	A	T	G	G	I	N	L	H	D	V	E	K	G	F	Q	A
Template Known Secondary structure		S											.	.	.	.	.	.	.	.				S		T	T								S			T										T	.	.	.	.	.	.	.	.	.	.									T	T	S												T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.											.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.		.	260
Predicted Secondary structure																																																																		.	.	.	.										.
Query SS confidence																																																																		.	.	.	.										.
Query Sequence		H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	.	.	.	.	I	L	T	S	A	K	A	L	G	.	G	G
Query Conservation																																																																		.	.	.	.										.
Alig confidence																	.																																																	.	.	.	.										.
Template Conservation																	.
Template Sequence		G	A	R	S	I	L	L	C	N	P	Y	N	P	L	G	.	X	V	F	A	P	E	W	L	N	E	L	C	D	L	A	H	R	Y	D	A	R	V	L	V	D	E	I	H	A	P	L	V	F	D	G	Q	H	T	V	A	A	G	V	S	D	T	A	A	S	V	C	I	T	I	T	A	P	S	A	W	N	I	A	G
Template Known Secondary structure		T								S	S	B	T	T	T	T	.	B																	T	T								T	T	G	G	G	B	S	S	S					G	G	G	S																				G	G
Template Predicted Secondary structure																	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I	S	A	M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	M	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	C	A	Q	I	I	F	S	N	P	S	D	A	E	H	W	Q	Q	L	S	P	V	I	K	D	G	A	S	T	L	G	L	I	A	A	E	A	A	Y	R	Y	G	T	D	F	L	N	Q	E	V	A	Y	L	K	N	N	H	D	F	L	L	H	E	I	P	K	R	I	P	G	A	K	I	T	P	X	Q	A	T
Template Known Secondary structure		G									S										S																																																	S	T	T							S	B
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		L	I	G	A	E	L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	.	.	.	.	.	.	G	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A	H	A	V	A	K
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.								.	.
Template Conservation																																														.	.
Template Sequence		Y	L	X	W	I	D	F	R	D	T	T	I	E	G	S	P	S	E	F	F	I	E	K	A	K	V	A	X	N	D	G	A	W	F	G	E	D	G	T	G	F	C	R	L	.	.	N	F	A	T	S	R	E	V	L	E	E	A	I	D	R	X	A	K	A	V	S	H
Template Known Secondary structure		S							T	T	S				S																	G	G	G	G		G	G	G	T	T					.	.				S																	T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions