Job Description P18335 Confidence 99.95% Date Thu Jan 5 11:36:49 GMT 2012 Rank 109 Aligned Residues 330 % Identity 12% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																								.																					.	.	.	.
Query SS confidence																																								.																					.	.	.	.
Query Sequence		G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	W	H	I	S	.	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	F	.	.	.	.	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E	T	A
Query Conservation																																								.																					.	.	.	.
Alig confidence												.	.							.																				.																					.	.	.	.
Template Conservation												.	.							.
Template Sequence		K	K	R	G	L	D	L	G	I	G	.	.	E	P	Q	F	E	T	.	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F
Template Known Secondary structure		S	S				B					.	.	S			S			.										T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S	S	S
Template Predicted Secondary structure												.	.							.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V	E	P	I
Query Conservation
Alig confidence					.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Sequence		P	S	F	.	.	.	.	.	.	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	.	.	.	.	.	.	.	.	.	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	E	V	D	L	V	I	L	N	S	P
Template Known Secondary structure					.	.	.	.	.	.		T	T	T		S	S								S			T									T	T									.	.	.	.	.	.	.	.	.		G	G	G	T	T													S						S	S
Template Predicted Secondary structure					.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.										.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.																	.
Query Sequence		Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	D	L	F	A	Y	M	.	.	.	.	.	.	.	.	.	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	.	G	G	F	P	I	S	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.																	.
Alig confidence							.																																										.	.	.	.	.	.	.	.	.																	.
Template Conservation							.
Template Sequence		N	N	P	T	G	.	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	S	A	P	G	L	R	S	G	F
Template Known Secondary structure			T	T	T		.																		T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					T		G	G	G
Template Predicted Secondary structure							.
Template SS confidence
		163	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	M	G	L	L	I	G	A	E
Query Conservation
Alig confidence																																					.	.	.																													.	.	.	.
Template Conservation																																					.	.	.																													.	.	.	.
Template Sequence		I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	.	.	.	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	I	.	.	.	.	Y	P	Y	S	F	Y	V	Y	L	P
Template Known Secondary structure																																					.	.	.		S																					S	T	T				.	.	.	.		S	B	S	S
Template Predicted Secondary structure																																					.	.	.																													.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.					.	.	.	.	.	310	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence		L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	.	.	.	.	.	.	.	.	G	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A	H	A	V	A	K
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																				.	.	.	.	.	.	.	.								.	.
Template Conservation					.	.	.	.																																			.	.
Template Sequence		V	Q	N	.	.	.	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	.	.	A	L	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure			S		.	.	.	.															B				G	G	G	G		S	T	T	T	T	T	T					.	.				S																		T
Template Predicted Secondary structure					.	.	.	.																																			.	.
Template SS confidence
		315	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions