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Job DescriptionP18335
Confidence99.96%DateThu Jan 5 11:36:49 GMT 2012
Rank83Aligned Residues346
% Identity11%Templatec3eibB_
PDB info PDB header:transferaseChain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  QQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETLW. . . . . . . HISNVFTNEPALRLGRKLIEATF. . AERVVFMNSGT
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Template Sequence  YPDAQVISLGIGDTTEPI. . . PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK
Template Known Secondary structure  STT



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   110.........120.........130.........140.........150...... ...160.........170.........180........
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Query Sequence  EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPK. YSDGFGPKPADIIHVPFNDLHAVKAVMDDHTC
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Template Sequence  CDISRLQVM. . . . . . . . . FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTD
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   130........ .140.........150.........160.........170.........180.........190.........200
 
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Query Sequence  AVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLFAYMHY. . . . GVTPDILTSAKALG. GGFPI
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Template Sequence  IIFFCSPNNPTG. AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL
Template Known Secondary structure  SS
TTT
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SSGGGSTTGGGTSSTTTT

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   201........210.. .......220.........230.........240.........250.........260.........270.........
 
   264.....270..... ....280.........290.........300.........310.........320.........330.....
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Query Sequence  SAMLTTAEIASA. . . . . . . . FHPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDI
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Template Sequence  GWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLE. AMHKVIGFYKENTNIIIDTFTSLGYDVYG
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   280.........290.........300.........310.........320......... 330.........340.........350........
 
   336...340.........350.........360.........370. ........380.........390.........400..
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Query Sequence  RGMGLLIGAELKPQYKGRARDFLYAGAEAGVMVLNA. . . . . . GPDVMRFAPSLVVEDADIDEGMQRFAHAVAK
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Template Sequence  GKNAPYVWVHF. . PNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRV. . SAFGHRENILEACRRFKQLYKH
Template Known Secondary structure 
SSSS
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GGGG
GGGTT..

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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