Job Description P18335 Confidence 100.00% Date Thu Jan 5 11:36:49 GMT 2012 Rank 20 Aligned Residues 392 % Identity 27% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.
Predicted Secondary structure																			.	.																																																									.
Query SS confidence																			.	.																																																									.
Query Sequence		T	A	I	T	R	A	T	F	D	E	V	I	L	P	I	Y	A	.	.	P	A	E	F	I	P	V	K	G	Q	G	S	R	I	W	D	Q	Q	G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	W	H	I	S	.	N	V	F	T
Query Conservation																			.	.																																																									.
Alig confidence													.						.	.																																																									.
Template Conservation													.
Template Sequence		K	A	L	Y	D	R	D	G	A	A	I	.	G	N	L	Q	K	L	R	F	F	P	L	A	I	S	G	G	R	G	A	R	L	I	E	E	N	G	R	E	L	I	D	L	S	G	A	W	G	A	A	S	L	G	Y	G	H	P	A	I	V	A	A	V	S	A	A	A	A	N	P	A	G	A	T	I	L	S	A	S
Template Known Secondary structure												S	.		G	G	G				S	S									B	T					T	T	S						S	S	T	T	T	T	T		T	T		B	S														S		S		S		S	S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	.	.	.	F	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D
Query Conservation																	.	.	.
Alig confidence																	.	.	.																												.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		N	A	P	A	V	T	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	I	W	F	G	H	S	G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	.	.	.	.	.	.	R	S	G	V	I	A	F	A	G	A	Y	H	G	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y
Template Known Secondary structure															T	T	T		T	T	T							S	S																	S	.	.	.	.	.	.								T	T					S	S					T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		G	F	.	.	.	.	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		P	D	P	Y	R	P	Y	R	N	D	P	T	G	D	A	I	L	T	L	L	T	E	K	L	A	A	V	P	A	G	S	I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	I	L	V	V	C	D	E	V	K	V	G	L	A	R	S
Template Known Secondary structure				S	S	S		B	T	T	B	T	T	S													T	S		T	T									S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	G	G	F	P	I	S	A	M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I	Q	A	K	R
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		G	R	L	H	C	F	E	H	E	G	F	V	P	D	I	L	V	L	G	K	G	L	G	G	G	L	P	L	S	A	V	I	A	P	A	E	I	L	D	C	A	.	S	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G	L	A	V	L	E	T	I	D	R	D	D	L	P	A	M	A	E	R	K	G
Template Known Secondary structure		S	S	S	S	G	G	G	G	T	T				S						G	G	G	G	T	T	S													T	S		.	S	S	S	S			T	T	T	T																		T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.							.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																									.	.
Query SS confidence																																			.	.	.	.	.	.																									.	.
Query Sequence		Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	M	G	L	L	I	G	A	E	L	K	P	.	.	.	.	.	.	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	G	.	.	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A
Query Conservation																																			.	.	.	.	.	.																									.	.
Alig confidence																																			.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		R	L	L	R	D	G	L	S	E	L	A	K	R	H	P	L	I	G	D	I	R	G	R	G	L	A	C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	G	N	V	L	E	F	T	P	P	L	T	I	T	E	T
Template Known Secondary structure																T	T								T	T										T	T	T	T																		T							S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	E	G	M	Q	R	F	A	H	A	V	A	K	V	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	H	K	A	L	D	L	L	D	R	A	F	S	E	L	S	A
Template Known Secondary structure																T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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