Job Description P18335 Confidence 99.84% Date Thu Jan 5 11:36:49 GMT 2012 Rank 217 Aligned Residues 303 % Identity 15% Template c3bwnF_ PDB info PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase Resolution 2.25 Å

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		53	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.															.	.	.	.	.
Query SS confidence												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.															.	.	.	.	.
Query Sequence		V	T	A	L	G	H	C	H	P	A	.	.	.	.	.	.	L	V	N	A	L	K	T	Q	G	.	.	.	.	.	E	T	L	W	H	I	S	N	V	F	T	N	E	.	.	.	.	.	P	A	L	R	L	G	R	K	L	I	E	A	T	F	.	.	.	.	.	A	E	R	V	V	F	M	N	S	G	T	E	A
Query Conservation												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.															.	.	.	.	.
Alig confidence												.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		V	V	N	L	D	H	G	D	P	T	A	Y	E	E	Y	W	R	K	M	G	D	R	C	T	V	T	I	R	G	C	D	L	M	S	Y	F	S	D	M	T	N	L	C	W	F	L	E	P	E	L	E	D	A	I	K	D	L	H	G	V	V	G	N	A	A	T	E	D	R	Y	I	V	V	G	T	G	S	T	Q	L
Template Known Secondary structure						S	S				G	G	G								G	G	G	G						T	T	T	T		S	S		S		T	T	S	S	S	T	T	S																	S	B			T	T	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	.	.	.	.	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T
Query Conservation																								.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.					.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Q	A	A	V	H	A	L	S	S	.	.	.	.	.	.	.	.	L	A	R	S	Q	P	V	S	V	V	A	A	A	P	F	Y	S	T	Y	V	E	E	T	T	Y	V	R	S	G	M	Y	K	W	E	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	G	F	D	K	K	G	P
Template Known Secondary structure												.	.	.	.	.	.	.	.		S	S	S	S	S							S	S											T	T			T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																		.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.
Predicted Secondary structure																																																																									.								.
Query SS confidence																																																																									.								.
Query Sequence		C	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	.	G	G	F	P	I	S	A	.
Query Conservation																																																																									.								.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																				.								.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		Y	I	E	L	V	T	S	P	N	N	P	D	G	T	I	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	A	K	V	I	H	D	F	A	Y	Y	W	P	H	Y	T	P	.	.	.	I	T	R	R	Q	D	H	D	I	M	L	F	T	F	S	K	I	T	G	H	A	G	S	R	I	G	W	A
Template Known Secondary structure								S	S		T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.											T	T		S	T	T	T	S		.	.	.			S		B			S													G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.														.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		M	L	T	T	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	.	.	.	.	.	.	.	.	I	N	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	.	.	.	V	F	S	D
Query Conservation																																						.	.	.	.	.	.	.	.																														.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		L	V	K	D	K	E	V	A	K	K	M	V	E	Y	I	I	V	N	S	I	G	V	S	K	E	S	Q	V	R	T	A	K	I	L	N	V	L	K	E	T	C	K	S	E	S	E	S	E	N	F	F	K	Y	G	R	E	M	M	K	N	R	W	E	K	L	R	E	V	V	K	E	S	D	A	F	T	L	P	K	Y
Template Known Secondary structure																					S	S																					T			S	T	T	T	S																						T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																					.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																					.	.	.	.	.
Query Sequence		I	R	G	M	G	L	L	I	G	A	E	L	K	P	Q	Y	K	.	.	.	.	.	.	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	.	.	.	.	.	G	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A	H
Query Conservation																			.	.	.	.	.	.																					.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																					.	.	.	.	.								.	.
Template Conservation																																																									.	.
Template Sequence		P	E	A	F	C	N	Y	F	G	K	S	L	E	S	Y	P	A	F	A	W	L	G	T	K	E	E	T	D	L	V	S	E	L	R	R	H	K	V	M	S	R	A	G	E	R	C	G	S	D	K	K	H	V	R	V	.	.	S	M	L	S	R	E	D	V	F	N	V	F	L	E	R	L	A	N
Template Known Secondary structure							T	T	T	T								S							S	S	S									T	T	T						T	G	G	G	T	S		T	T					.	.		S		S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions