Job Description P18335 Confidence 99.95% Date Thu Jan 5 11:36:49 GMT 2012 Rank 129 Aligned Residues 327 % Identity 13% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.																						.
Query SS confidence																																					.	.	.	.	.	.	.																						.
Query Sequence		G	K	E	Y	V	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	N	A	L	K	T	Q	G	E	T	L	W	.	.	.	.	.	.	.	H	I	S	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	.	T	F	A	E	R	V	V	F	M	N	S	G	T	E	A	N
Query Conservation																																					.	.	.	.	.	.	.																						.
Alig confidence												.	.	.																							.	.	.	.	.	.	.																						.
Template Conservation												.	.	.
Template Sequence		Q	H	T	V	I	N	L	S	I	G	.	.	.	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L
Template Known Secondary structure		T	S						S	S		.	.	.																						T	S	S	S								T	T												T	T	S	T	T	S	S		G	G	G					S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	L	L	S	F	.	.	.	.	.	.	.	.	.	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	.	.	.	.	.	.	.	.	.	.	C	L	Q	E	N	A	F	F	P	E	F	P	E	D	T	H	I	D	I	L	C	L
Template Known Secondary structure								.	.	.	.	.	.	.	.	.			S	S								S												T	T		S							.	.	.	.	.	.	.	.	.	.			G	G	G	T	T						T	T				S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.											.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R	T	G	D	L	F	.	.	.	.	.	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	G	G	F	P	I	S	A	M	L
Query Conservation																																																	.	.	.	.	.
Alig confidence										.																																							.	.	.	.	.
Template Conservation										.
Template Sequence		C	S	P	N	N	P	T	G	.	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T
Template Known Secondary structure			S	S		T	T	T		.																		T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T									G	G	G	T	T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		268	.	270	.										.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.
Query Sequence		T	T	A	E	.	.	.	.	.	.	.	.	.	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	M
Query Conservation						.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	.	.	.	.	.	T	G	F	E	V	F	G	G	E
Template Known Secondary structure					T	T		B		T	T	S		B																															T	T	T																					.	.	.	.	.	T	T							S
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																												.								.	.	.	.	.	.
Query SS confidence																												.								.	.	.	.	.	.
Query Sequence		G	L	L	I	G	A	E	L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	.	G	V	M	V	L	N	A	.	.	.	.	.	.	G	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A
Query Conservation																												.								.	.	.	.	.	.
Alig confidence																												.								.	.	.	.	.	.								.	.
Template Conservation																																																	.	.
Template Sequence		H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	.	.	S	S	L	G	K	R	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure		S	S	S									T	T			T	T	T										S						G	G	G	G		G	G	G	T	T					.	.				S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions