Job Description P18335 Confidence 99.93% Date Thu Jan 5 11:36:49 GMT 2012 Rank 166 Aligned Residues 290 % Identity 16% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	I	S	N	V	F	T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	F	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.
Template Sequence		G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	.	.	.	.	.	.	.	.	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R
Template Known Secondary structure				S	B	T	T	T																	T		S						S	S										.	.	.	.	.	.	.	.	T	T	T			T	T							S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.
Template SS confidence
		1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.									.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	Y	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D	E	V	Q	C	G	M	G	R
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																						.	.	.	.																							.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																						.	.	.	.																							.	.	.	.
Template Sequence		F	G	I	E	.	.	.	.	.	.	.	.	.	V	D	L	I	D	T	S	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	.	.	.	.
Template Known Secondary structure		T	T			.	.	.	.	.	.	.	.	.						T	T	S										T	T								S	S		T	T	T						.	.	.	.												T								T	T	T	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																						.	.	.	.																							.	.	.	.
Template SS confidence
		1622	.	.	.										.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.					.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																														.	.								.
Query SS confidence																														.	.								.
Query Sequence		T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	G	G	F	P	.	.	I	S	A	M	L	T	T	.	A	E	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	T	P	E	V	L	E	G	I
Query Conservation																														.	.								.
Alig confidence																														.	.								.																																	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		S	P	C	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	.	.	.	.	.	.	L	P	I	R
Template Known Secondary structure			T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S																															T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		1685	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.							.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.																			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	M	G	L	L	I	G	A	E	L	K	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	G	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																									.
Template Conservation																																																							.	.
Template Sequence		M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	.	.	K	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V
Template Known Secondary structure																		T		T	T							T	T	S	T	T	S	T	T									S	S			S							.	.	S	S									T	S		S	S	S				S					S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		1759	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.			.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.
																												373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M	Q	R	F	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure		S						T	T	T	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		1837	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions