Return to main results Retrieve Phyre Job Id

Job DescriptionP18335
Confidence99.97%DateThu Jan 5 11:36:49 GMT 2012
Rank67Aligned Residues334
% Identity14%Templatec2douA_
PDB info PDB header:transferaseChain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70. ........80.........90........ .100.........110.
Predicted Secondary structure 










...











.....



Query SS confidence 































. . .


























. . . . .












Query Sequence  QGKEYVDFAGGIAVTALGHCHPALVNALKTQG. . . ETLWHISNVFTNEPALRLGRKLIEATF. . . . . AERVVFMNSGTEA
Query Conservation 

   

         


  
 
  
     ...                 

  
    
.....        


 
Alig confidence 










..





.











...


























.....












Template Conservation   
   
 
  
..      .      
   

       
    
   

 


  
    
        
    
    
Template Sequence  RGVGLIDLSIG. . STDLPP. PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEG
Template Known Secondary structure  TT



SS
..





.
TT
GGGSS


S



TTTSSS
Template Predicted Secondary structure 








..





.




















Template SS confidence 















































































   23......30... ...... 40.........50.........60.........70.........80.........90.........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  NETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVV
Query Conservation     

  
              

      

                               
   
          

Alig confidence 







........































........























Template Conservation 
      
........   

 


  
 
          
       ........                        
Template Sequence  LAHLLLAL. . . . . . . . TEPEDLLLLPEVAYPSYFGAARVASLRTFLIP. . . . . . . . LREDGLADLKAVPEGVWREAKVLL
Template Known Secondary structure  ........

TT
SS

TT

........B
TTSSB
GGGS
Template Predicted Secondary structure  ........












........
















Template SS confidence 















































































   100....... ..110.........120.........130......... 140.........150.........160...
 
   192.......200.........210.........220.........230......... 240.........250........ .260......
Predicted Secondary structure 



























....






.





Query SS confidence 















































. . . .


















.







Query Sequence  VEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLF. . . . AYMHYGVTPDILTSAKALG. GGFPISAM
Query Conservation 

      
        
  
  
    
  

 

   
 
  
   ....         

 
 

 
 . 
      
Alig confidence 








.





































....


















.







Template Conservation       



.          
          

 

                       

   
 

     
   
  
Template Sequence  LNYPNNPTG. AVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFA
Template Known Secondary structure 
SS
TTT
.



TT

TTGGGBSSS



GGGSTTGGGTT
GGG

Template Predicted Secondary structure 








.










































Template SS confidence 















































































   164.....170.. .......180.........190.........200.........210.........220.........230.........240..
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  LTTAEIASAFHPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIRGMGLLIGAEL
Query Conservation                   
         
                           
            
   
    
  
Alig confidence 

































..


































.







Template Conservation                                    ..                       
        
  .
      
Template Sequence  LGSEEALARLERVKGVIDFNQYAGVLRMGVEALK. . TPKEVVRGYARVYRERALGMAEALKGVLSLLPPRA. TMYLWGRL
Template Known Secondary structure 



S
T..S
TTTS



B.SS
Template Predicted Secondary structure 











..







.

Template SS confidence 















































































   243......250.........260.........270...... ...280.........290.........300.........310. ........
 
   347..350.........360.........370. ........380.........390.........400
Predicted Secondary structure 






......







Query SS confidence 
























. . . . . .




























Query Sequence  KPQYKGRARDFLYAGAEAGVMVLNA. . . . . . GPDVMRFAPSLVVEDADIDEGMQRFAHAV
Query Conservation            
   
   

   
 ......
   


      
 
 

  
  
  

Alig confidence  ..






















......






..



















Template Conservation  ..            
   

 
 

  
       


..
     
 
   
  
   
Template Sequence  . . PEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRI. . ALVRPLEELLEAAKRIREAL
Template Known Secondary structure  ..
TT

TT
GGGG
GGGTT..

S
T
Template Predicted Secondary structure  ..

















..




Template SS confidence 



























































   320.........330.........340.........350..... ....360.........370.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions