Job Description P18335 Confidence 99.74% Date Thu Jan 5 11:36:49 GMT 2012 Rank 230 Aligned Residues 308 % Identity 13% Template c1c4kA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) Resolution 2.70 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																																				.							.
Query SS confidence																																																																				.							.
Query Sequence		T	N	E	P	A	L	R	L	G	R	K	L	I	E	A	T	F	A	E	R	V	V	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	.	T	V	S	V	G	G	.	Q	P	K	Y	S	D
Query Conservation																																																																				.							.
Alig confidence																																										.	.	.	.	.	.	.	.																			.							.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		H	E	G	P	A	V	A	A	E	K	H	A	A	R	V	Y	N	A	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	.	.	.	.	.	.	.	.	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q
Template Known Secondary structure		T	B	T													T	T		S						S	S															.	.	.	.	.	.	.	.		T	T							T	T										T	T	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.												.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	.	.	D	L	H	A	V	K	A	V	M	D	D	H	T	C	.	.	.	.	.	.	.	.	.	.	.	A	V	V	V	E	P	I	Q	G	E	G	G	V	T	A	A	T	P	E	F	L	Q	G	L	R	E	L	C	D	Q	H	Q	A	L	L	V	F	D
Query Conservation																	.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.															.	.	.	.	.	.	.	.	.	.	.									.	.							.	.	.	.
Template Conservation																																																				.	.							.	.	.	.
Template Sequence		T	N	R	N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	T	Y	.	.	D	G	T	I	Y	N	.	.	.	.	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D
Template Known Secondary structure						T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B		T	.	.	T	S					.	.	.	.									G	G	G	B	S
Template Predicted Secondary structure																																																				.	.							.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.											.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.															.	.	.	.						.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.															.	.	.	.						.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	Q	C	G	M	G	R	T	.	.	.	.	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	.	.	.	.	I	L	T	S	A	.	.	K	A	L	G	G	G	F	P	I	S	A	M	L	T	T	A	E	.	.	.	.	.	.	.	.	.	.	I	A	S	A	F	H	P	G	S	H	G	S	T	Y	G
Query Conservation											.	.	.	.															.	.	.	.						.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.															.	.	.	.						.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	W	V	G	Y	E	Q	F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	S
Template Known Secondary structure			T	T			G	G	G	S	S	G	G	G	G	G	G		T	T	S						T	T	S													S	S			T	T									G	G	G	T	T	S	T	T															S		S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N	.	.	.	T	P	E	V	L	E	G	I	Q	A	K	R	Q	R	F	V	D	H	L	Q	K	I	D	Q	Q	Y	D	V	F	S	D	I	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R	F	E	K	G	A
Template Known Secondary structure																		S																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B			T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
																	338	.	340	.	.	.	.	.	.	.										.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	L	L	I	G	A	E	L	K	.	.	.	.	.	.	.	.	.	P	Q	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	G	P	D	V	M	R	F	A	P	S	L	V	V	E	D	A	D	I	D	E	G	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	I	P	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E	T	P	A	K	M	N	N	L	I
Template Known Secondary structure		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S														T	T				S				S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	F	A	H	A	V	A	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	L	L	Q	L	Q	R	L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions