Job Description A5A628 Confidence 10.90% Date Thu Jan 5 10:55:31 GMT 2012 Rank 5 Aligned Residues 44 % Identity 36% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

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		21	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure									.	.																	.	.	.	.	.	.	.	.
Query SS confidence									.	.																	.	.	.	.	.	.	.	.
Query Sequence		S	V	S	V	L	P	A	.	.	Y	A	G	P	L	G	T	A	D	K	A	D	L	P	Q	S	.	.	.	.	.	.	.	.	N	V	S	S	P	M	M	A	Q	S	L	R	Q	P	D	L	Q	P	I	S	T	D	R	K	T	E	C
Query Conservation									.	.																	.	.	.	.	.	.	.	.
Alig confidence									.	.																	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		S	V	S	M	L	A	G	P	N	D	R	S	D	V	E	K	G	G	K	I	I	M	P	P	S	A	L	D	Q	L	S	R	L	N	I	T	Y	P	M	L	F	K	.	.	.	.	.	.	L	T	N	K	N	S	D	R	M	T	H	C
Template Known Secondary structure			S	T	T	S	S	S	S	S			S	T	T	T	T	T	T															T	T			S	S					.	.	.	.	.	.				T	T	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions