Job Description A5A628 Confidence 11.88% Date Thu Jan 5 10:55:31 GMT 2012 Rank 4 Aligned Residues 44 % Identity 30% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

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		21	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure												.	.														.	.	.	.	.	.	.	.
Query SS confidence												.	.														.	.	.	.	.	.	.	.
Query Sequence		S	V	S	V	L	P	A	Y	A	G	.	.	P	L	G	T	A	D	K	A	D	L	P	Q	S	.	.	.	.	.	.	.	.	N	V	S	S	P	M	M	A	Q	S	L	R	Q	P	D	L	Q	P	I	S	T	D	R	K	T	E	C
Query Conservation												.	.														.	.	.	.	.	.	.	.
Alig confidence												.	.														.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		P	I	A	M	M	N	D	R	I	R	K	D	D	A	N	F	G	G	K	I	F	L	P	P	S	A	L	S	K	L	S	M	L	N	I	R	Y	P	M	L	F	K	.	.	.	.	.	.	L	T	A	N	E	T	G	R	V	T	H	G
Template Known Secondary structure			G	G	G	S		T	T	T	S							S	S															T	T			S	S					.	.	.	.	.	.				T	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions