Job Description P76471 Confidence 95.35% Date Thu Jan 5 12:23:16 GMT 2012 Rank 26 Aligned Residues 147 % Identity 14% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																					.																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.																					.	.	.	.	.	.	.	.
Query Sequence		M	S	I	S	G	Q	A	G	K	E	Y	T	N	I	G	V	G	F	G	T	E	T	T	G	L	A	L	S	G	N	W	T	H	N	D	D	D	G	D	V	A	G	V	G	L	G	L	N	L	P	L	.	G	P	L	M	A	T	V	G	G	K	G	V	Y	T	N	P	N	Y	G	D	.	.	.	.	.	.	.	.
Query Conservation																																																					.																					.	.	.	.	.	.	.	.
Alig confidence																									.	.	.									.	.	.															.																					.	.	.	.	.	.	.	.
Template Conservation																									.	.	.									.	.	.
Template Sequence		L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	.	.	.	V	T	A	D	Y	R	T	S	.	.	.	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R
Template Known Secondary structure																				S	S	S			.	.	.									.	.	.										B					G	G	G																						S	S	S
Template Predicted Secondary structure																									.	.	.									.	.	.
Template SS confidence
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.				.	.	.	.	.	860	.	.				.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.
								93	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.	.																.	.	.	.
Query SS confidence		.	.	.	.	.	.																.	.	.	.
Query Sequence		.	.	.	.	.	.	E	G	Y	A	A	A	V	G	G	G	L	Q	W	K	I	.	.	.	.	G	N	S	F	R	L	F	G	E	Y	Y	Y	S	P	D	S	L	S	S	G	I	Q	S	Y	E	E	A	N	A	G	A	R	Y	T	I	M	R	P	V	S	I	E	A	G	Y	R	Y	L	N	L	S	G	K	D	G
Query Conservation		.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.	.	.	.	.																.	.	.	.																																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	.	.	.	.	.	.
Template Known Secondary structure																									T	T	S																					B														G	G	G	B											.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	D	N	A	V	A	D	G	P	Y	V	G	V	N	A	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure			S	S													B
Template Predicted Secondary structure
Template SS confidence
		993	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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