Job Description P76471 Confidence 12.57% Date Thu Jan 5 12:23:16 GMT 2012 Rank 49 Aligned Residues 160 % Identity 11% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		S	A	S	V	N	A	M	S	I	S	G	Q	A	G	K	E	Y	T	N	I	G	V	G	F	G	T	E	T	T	G	L	A	L	S	G	N	W	T	H	N	D	D	D	G	D	.	.	.	.	.	.	.	V	A	G	V	G	L	G	L	N	L	P	L	G	P	L	M	A	T	V	G	G	K	G	V	Y	T	N	P
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S
Template Known Secondary structure											T	T	T															S	S																T	T		T	T																	T	T													S	S
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		89	90	.																						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.		.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.		.
Query Sequence		N	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	Y	A	A	A	V	G	G	G	L	Q	W	K	I	.	.	G	N	S	F	R	L	F	G	E	Y	Y	Y	S	P	D	S	L	S	S	.	G	.	I	Q	S	Y	E	E	A	N	A	G	A	R	Y	T	I	M
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.		.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.		.
Template Conservation
Template Sequence		A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q
Template Known Secondary structure						B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
						144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	P	V	S	I	E	A	G	Y	R	Y	L	N	L	S	G	K	D	G	N	R	D	N	A	V	A	D	G	P	Y	V	G	V	N	A	S	F
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																									.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	E	N	.	.	.	.	.	R	L	I	I	S	Y	P	L
Template Known Secondary structure		S	S	S	S	T	T													S	S		S							.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.						410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions