Job Description P76471 Confidence 38.19% Date Thu Jan 5 12:23:16 GMT 2012 Rank 38 Aligned Residues 154 % Identity 16% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																.																	.	.	.	.	.	.	.
Query SS confidence																																.																	.	.	.	.	.	.	.
Query Sequence		V	S	A	S	V	N	A	M	S	I	S	G	Q	A	G	K	E	Y	T	N	I	G	V	G	F	G	T	E	T	T	.	G	L	A	L	S	G	N	W	T	H	N	D	D	D	G	D	.	.	.	.	.	.	.	V	A	G	V	G	L	G	L	N	L	P	L	G	P	L	M	A	T	V	G	G	K	G	V	Y	T
Query Conservation																																.																	.	.	.	.	.	.	.
Alig confidence																																.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	A	S	Y	Y	Y	G	Q	L	K	D	I	Y	R	Q	H	Y	L	G	L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E	D	G	A	A	I	S	G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	A	H	A	F	G	I	G	V	Q	K	M	I	G
Template Known Secondary structure												T	T	T															S	T	T																T	T		T	T																	T	T												S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		87	.	.	90	.																						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.		.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.	.		.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.	.		.
Query Sequence		N	P	N	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	Y	A	A	A	V	G	G	G	L	Q	W	K	I	.	.	G	N	S	F	R	L	F	G	E	Y	Y	Y	S	P	D	S	L	S	S	.	.	G	.	I	Q	S	Y	E	E	A	N	A	G	A	R	Y
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.	.		.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.	.		.
Template Conservation
Template Sequence		N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L	M	T	R	Y	V	Q	G	R	D	I	D	R	G	A	G	R	A	D	D	S	E	W	E	R	N	T	D	L	S	Y
Template Known Secondary structure		S	S					B	T	T	T		B				T	T			S	S			S		S	T	T													T	T	T	T		T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		141	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		T	I	.	.	.	.	M	R	P	V	S	I	E	A	G	Y	R	Y	L	N	L	S	G	K	D	G	N	R	D	N	A	V
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		V	I	Q	S	G	P	L	K	S	V	A	L	K	W	R	N	I	T	Y	R	S	R	Y	G	A	D	L	D	E	N	R	F
Template Known Secondary structure					S	S	T	T	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions