Job Description P76471 Confidence 88.49% Date Thu Jan 5 12:23:16 GMT 2012 Rank 33 Aligned Residues 150 % Identity 12% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		L	L	V	S	A	S	V	N	A	M	S	I	S	G	Q	A	G	K	E	Y	T	N	I	G	V	G	F	G	T	E	T	T	G	L	A	L	S	G	N	W	T	H	N	D	D	D	G	D	V	A	G	V	G	L	G	L	N	L	P	L	G	P	.	.	.	.	L	M	A	T	V	G	G	K	G	V	Y	T	N	P
Query Conservation																																																																.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	F	V	S	D	Q	A	E	A	K	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	D	S	S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	V	G	F	G	V	D	A	F	G	Y	L	G	L	K
Template Known Secondary structure			S				T	T	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B																																			S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.															.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		N	Y	G	D	E	G	Y	A	A	A	V	G	G	G	L	Q	W	K	I	G	N	S	F	R	L	F	G	E	Y	Y	Y	S	P	D	S	L	S	S	G	.	.	.	I	Q	S	Y	E	E	A	N	A	G	A	R	Y	T	I	M	R	P	V	S	I	E	A	G	Y	R	Y	L	N	L	S	G	K	D	G	N	R	D
Query Conservation																																									.	.	.
Alig confidence																						.																			.	.	.										.																	.	.
Template Conservation																						.																															.																	.	.
Template Sequence		L	D	G	T	D	Y	S	R	A	G	G	A	V	K	V	R	I	S	K	T	.	X	L	K	W	G	E	X	Q	P	T	A	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	.	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	.	.	T	E	E	L	Y	A	T	Y	A	G
Template Known Secondary structure																			T	T		.											S	T	T	B						S	S	S									.						S	T	T									.	.							T	T	T
Template Predicted Secondary structure																						.																															.																	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	A	D	G	P	Y	V	G	V	N	A	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I
Template Known Secondary structure					S											S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions