Job Description P76471 Confidence 21.00% Date Thu Jan 5 12:23:16 GMT 2012 Rank 44 Aligned Residues 146 % Identity 18% Template c2k4tA_ PDB info PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles Resolution UNK

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		M	S	I	S	G	Q	A	G	K	E	Y	T	N	I	G	V	G	F	G	T	E	T	T	G	L	A	L	S	G	N	W	T	H	N	D	D	D	G	D	V	A	G	V	G	L	G	L	N	L	P	L	G	P	L	M	A	T	V	G	.	.	.	.	G	K	G	V	Y	T	N	P	N	Y	G	D	E	G	Y	A	A
Query Conservation																																																													.	.	.	.
Alig confidence																																																													.	.	.	.													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		C	D	M	D	F	D	I	A	G	P	S	I	R	G	A	L	V	L	G	Y	E	G	W	L	A	G	Y	Q	M	N	F	E	T	A	K	S	R	V	T	Q	S	N	F	A	V	G	Y	K	T	D	E	F	Q	L	H	T	N	V	N	D	G	T	E	F	G	G	S	I	Y	Q	K	V	N	K	K	.	.	.	.	L
Template Known Secondary structure							S	S	S	S												T	T											T	T	T	T	S													S	S									T	T	T											S	T	T	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.
		98	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure														.	.	.																			.
Query SS confidence														.	.	.																			.
Query Sequence		A	V	G	G	G	L	Q	W	K	I	G	N	.	.	.	S	F	R	L	F	G	E	Y	Y	Y	S	P	D	S	L	S	S	G	.	I	Q	S	Y	E	E	A	N	A	G	A	R	Y	T	I	M	R	P	V	S	I	E	A	G	Y	R	Y	L	N	L	S	G	K	D	G	N	R	D	N	A	V	A	D	G	P	Y
Query Conservation														.	.	.																			.
Alig confidence														.	.	.																			.																											.			.	.	.	.	.	.	.	.
Template Conservation																																																														.			.	.	.	.	.	.	.	.
Template Sequence		E	T	A	V	N	L	A	W	T	A	G	N	S	N	T	R	F	G	I	A	A	K	Y	Q	I	D	P	D	A	C	F	S	A	K	V	N	N	S	S	L	I	G	L	G	Y	T	Q	T	L	K	P	G	I	K	L	T	L	S	A	L	.	L	D	.	.	.	.	.	.	.	.	G	K	N	V	N	A	G	G	H
Template Known Secondary structure											T	T	S	S														T	T									S	S	S											S	S	S									.		S	.	.	.	.	.	.	.	.	T	T		G	G	G	T
Template Predicted Secondary structure																																																														.			.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.									.	.	.	.	.	270	.	.	.
			174	.	.	.	.	.	180
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	G	V	N	A	S	F
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		K	L	G	L	G	L	E	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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