Job Description P32701 Confidence 46.43% Date Thu Jan 5 11:50:21 GMT 2012 Rank 259 Aligned Residues 106 % Identity 17% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	D	V	D	K	M	T	P	I	I	L	A	F	R	Q	A	G	Y	E	V	A	I	D	D	F	G	I	G	Y	S	N	L	H	N	L	K	S	L	N	V	D	I	L	K	I	D	K	S	F	V	E	T	L	T	T	H	K	T	S	H	L	I	A	E	H	I	I	E	L	A	H	S	L	G	L	K	T	I	A	.
Query Conservation																																																																																	.
Alig confidence																							.	.																								.	.	.	.					.														.	.										.
Template Conservation																							.	.																								.	.	.	.					.														.	.
Template Sequence		D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	.	.	S	A	E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	.	.	.	.	L	L	L	P	.	D	V	N	G	L	E	I	L	K	W	I	K	E	.	.	R	S	P	E	T	E	V	I	V	I
Template Known Secondary structure																		T					.	.			S	S											S			S						.	.	.	.	S	B		S	.	S	S	B											.	.			T	T	S
Template Predicted Secondary structure																							.	.																								.	.	.	.					.														.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	V	E	T	E	E	Q	V	N	W	L	R	K	R	G	V	R	Y	C	Q	G	W	F	F	A	K	A	M	P	P	Q	V	F	M	Q	W	M	E	Q
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		T	G	H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	.	.	.	.	L	T	K	P	C	M	L	E	E	I	E	L	T	I	N	K
Template Known Secondary structure				T	T										T	T	T					.	.	.	.				S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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