Job Description P10907 Confidence 100.00% Date Thu Jan 5 11:32:26 GMT 2012 Rank 41 Aligned Residues 215 % Identity 27% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.
Predicted Secondary structure															.																																																														.	.
Query SS confidence															.																																																														.	.
Query Sequence		A	G	L	K	L	Q	A	V	T	K	S	W	D	.	G	K	T	Q	V	I	K	P	L	T	L	D	V	A	D	G	E	F	I	V	M	V	G	P	S	G	C	G	K	S	T	L	L	R	M	V	A	G	L	E	R	V	T	E	G	D	I	W	I	N	D	Q	R	V	T	E	M	E	P	K	D	.	.	R	G	I
Query Conservation															.																																																														.	.
Alig confidence															.																																																														.	.
Template Conservation
Template Sequence		G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T	N	L	R	R	H	F
Template Known Secondary structure					B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S					S				T	T			S	T	T	S		S	S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	V	F	Q	N	Y	A	L	Y	P	H	M	S	V	E	E	N	M	A	W	G	L	K	I	R	G	M	G	K	Q	Q	I	A	E	R	V	K	E	A	A	R	I	L	E	L	D	G	L	L	K	R	R	P	R	.	.	.	.	.	.	.	.	.	.	.	E	L	S	G	G	Q	R	Q	R	V	A	M	G	R
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.											.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.											.	.	.	.	.
Template Sequence		A	L	V	S	Q	N	V	H	L	F	N	.	D	T	I	A	N	N	I	A	Y	A	.	.	.	.	.	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q	R	V	A	I	A	R
Template Known Secondary structure						S	S					T	.	T								T	T	.	.	.	.	.	S	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T
Template Predicted Secondary structure													.											.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440						.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	R	D	P	A	V	F	L	F	D	E	P	L	S	N	L	D	A	K	L	R	V	Q	M	R	L	E	L	Q	Q	L	H	R	R	L	K	T	T	S	L	Y	V	T	H	D	Q	V	E	A	M	T	L	A	Q	R	V	M	V	M	N	G	G	V	A	E	Q	I	G	T	P	V	E	V	Y	E	K
Query Conservation
Alig confidence																																					.	.															.
Template Conservation																																					.	.															.
Template Sequence		A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	K	T	V	L	V	I	A	H	R	L	S	T	I	.	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	R	G	R	H	A	D	L	L	A	Q
Template Known Secondary structure				T				S	S						S		S	S			T	T	T										T	T	T	T	.	.	T	S							S		G	G	G	G	.	G	T		S							S	S						S							S	S
Template Predicted Secondary structure																																					.	.															.
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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