Return to main results Retrieve Phyre Job Id

Job DescriptionP0CF47
Confidence71.12%DateThu Jan 5 11:31:02 GMT 2012
Rank304Aligned Residues42
% Identity10%Templated1smyf2
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.....
Predicted Secondary structure 









Query SS confidence 











































Query Sequence  RRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE
Query Conservation   

 


  

      
 

 



  

  
 
  
 
   
Alig confidence 














..


























Template Conservation   
   

 

 
   ..  
  


  



   
     


 
Template Sequence  KLSEREAMVLKLRKG. . LIDGEEVGAFFGVTRERIRQIENKALR
Template Known Secondary structure  TS
..TT



TTTSSSS
Template Predicted Secondary structure 



..





Template SS confidence 











































   360.........370.... .....380.........390.........400.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions