Job Description P0CF47 Confidence 83.64% Date Thu Jan 5 11:31:02 GMT 2012 Rank 149 Aligned Residues 72 % Identity 28% Template c2zhhA_ PDB info PDB header:transcription Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr; PDBTitle: crystal structure of soxr Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																																				.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	V	S	L	V	A	R	Q	H	G	V	A	A	S	Q	L	F	L	W	R	K	Q	Y	Q	E	G	S	L	T	A	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Q	V	V	P	A	S	E	L	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		L	T	P	G	E	V	A	K	R	S	G	V	A	V	S	A	L	H	F	Y	E	S	K	.	.	.	G	L	I	T	S	I	R	N	S	G	N	Q	R	R	Y	K	R	D	V	L	R	Y	V	A	I	I	K	I	A	Q	R	I	G	I	P	L	A	T	I	G	E	A	F	G	V	T	L	S	A	K	E	W	K	Q
Template Known Secondary structure												T	S											T	.	.	.	T	S	S						T	T	T						T	T														T	T										T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	K	Q	I	K	E	L	Q	R	L	L	G	K	K	T	M	E	N	E	L	L	K	E	A	V	E	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	S	Q	W	R	E	E	L	D	R	R	I	H	T	L	V	A	L	R	D	E	L	D	G	C	I	G	C	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions