Job Description P0CF47 Confidence 91.55% Date Thu Jan 5 11:31:02 GMT 2012 Rank 51 Aligned Residues 73 % Identity 21% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																											.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	V	S	L	V	A	R	Q	H	G	V	A	A	S	Q	L	F	L	W	R	K	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	G	S	L	T	A	V	A	A	G	E	Q	V	V	P	A	S	E	L	A	A	A	M	K	Q	I	K	E	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	D	R	A	H	L	R	R	Q	H	E	L	L
Template Known Secondary structure		B										T													T	S	S			S				S	S					B																	T	T											T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	L	L	G	K	K	T	M	E	N	E	L	L	K	E	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	R	I	G	K	L	Q	K	M	A	A	A	V	E	Q	A	M	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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