Return to main results Retrieve Phyre Job Id

Job DescriptionP0CF47
Confidence78.46%DateThu Jan 5 11:31:02 GMT 2012
Rank226Aligned Residues44
% Identity14%Templatec2dmqA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20....... ..30.........40.........
Predicted Secondary structure 








....






Query SS confidence 





















. . . .





















Query Sequence  GPEKRRRRTTQEKIAIVQQSFE. . . . PGMTVSLVARQHGVAASQLFLW
Query Conservation     


 

 


  

     .... 
 

 



  

  
 
  
Alig confidence 





















....





















Template Conservation   

 

  
  

  

  
  
  
       

    
   

  
Template Sequence  GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVW
Template Known Secondary structure 









SS

T


Template Predicted Secondary structure 

















Template SS confidence 















































   7..10.........20.........30.........40.........50....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions