Job Description P0AD44 Confidence 4.85% Date Thu Jan 5 11:19:58 GMT 2012 Rank 51 Aligned Residues 55 % Identity 18% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		P	A	Q	V	R	P	L	Y	Q	L	W	R	D	G	Q	A	L	Q	L	Q	L	A	E	E	R	Q	R	Y	S	K	L	.	.	Q	Q	S	S	D	S	E	L	D	T	L	R	Q	Q	H	H	V	L	Q	Q	Q	L	E	L
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		P	V	T	A	R	P	S	I	T	L	I	R	A	E	D	D	L	T	H	K	L	V	D	I	I	R	I	N	N	R	L	K	Q	N	I	E	A	G	A	P	Q	L	I	I	E	D	L	W	D	L	L	Q	Y	H	V	T	T
Template Known Secondary structure			G	G	G	S			B					B																								S				S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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