Return to main results Retrieve Phyre Job Id

Job DescriptionP22256
Confidence99.83%DateThu Jan 5 11:38:48 GMT 2012
Rank209Aligned Residues354
% Identity14%Templated1pmma_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Pyridoxal-dependent decarboxylase
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.. .......80.........90.........100.... .....110...
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Query Sequence  EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK. LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKK. . . . TLLVTTGSE
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Template Sequence  DGNARQNLATF. . . . CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSE
Template Known Secondary structure  S

GGGB
S

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TTT
BTT
TTTSTT



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SSS
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   53......60... ......70.........80.........90.........100.........110.........120........
 
   114.....120...... ...130.........140.........150.........160.........170.........180....
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Query Sequence  AVENAVKIARAAT. . . . . . . . . KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI
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Template Sequence  ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFM. . . . . . . . . . . . . . . . . DP
Template Known Secondary structure  T


S

SS

TT



BTTB
S
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   129130.........140.........150.........160.........170.........180......... 190.
 
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Query Sequence  ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG. . . . . . IMLIADEVQSG. . . . AGRTGTLFAM
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Template Sequence  KRMIEACD. . . . . ENTIGVVPTFGVTYTGNYEF. . . . PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF
Template Known Secondary structure 

.....TT
BBS
TTT
BB

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TTGGGT
TT


ST
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   192....... 200.........210......... 220.........230.........240.........250.........260..
 
   255....260.........270.........280.........290..... ....300.........310.........320....
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Query Sequence  EQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLG. . . . . . . . . . GTYAGNPIACVAALEVLKVFEQENLLQKA
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Template Sequence  RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKV
Template Known Secondary structure  TSTTTTTTT


SS
SSGGGS
GGG
TT

S

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BS
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   263......270.........280.........290.........300.........310.........320.........330.........340..
 
   325....330.........340.........350.. .......360.........370.........380.........390 ....
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Query Sequence  NDLGQKLKDGLLAIAEKHPEIGDVRGLG. . . . . AMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSC. . . . . GPYY
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Template Sequence  QNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED. . . . PGYTLYDLSERLRLRGWQVPAFTLGGEATDI
Template Known Secondary structure  TTS


TTTBSS
TT

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TTT
B



TT
TT
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   343......350.........360.........370.........380....... ..390.........400.........410........
 
   395....400.........410.........420......
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Query Sequence  NVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ
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Template Sequence  VVMRIMCRRGFEMDFAELLLEDYKASLKYLSD
Template Known Secondary structure 

TT

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   419420.........430.........440.........450
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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