Phyre 2 alignment of P22256 with d1m6sa

Job Description P22256
Confidence 100.00% Date Thu Jan 5 11:38:48 GMT 2012

Rank 45 Aligned Residues 340

% Identity 12% Template d1m6sa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A
Query Conservation
Alig confidence								.	.	.	.																	.	.	.	.																										.	.	.
Template Conservation								.	.	.	.																	.	.	.	.																										.	.	.
Template Sequence	M	I	D	L	R	S	D	.	.	.	.	T	V	T	K	P	T	E	E	M	R	K	A	M	A	Q	A	.	.	.	.	E	V	G	D	D	V	Y	G	E	D	P	T	I	N	E	L	E	R	L	A	A	E	T	F	G	.	.	.	K	E	A	A	L	F	V	P	S	G	T	M	G	N	Q	V	S	I	M	A	H
Template Known Secondary structure					S		G	.	.	.	.	G	G													T		.	.	.	.					G	G	G	T																T	T	.	.	.		S						S
Template Predicted Secondary structure								.	.	.	.																	.	.	.	.																										.	.	.
Template SS confidence
	1	.	.	.	.	.	.					.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.

	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	.	N	D	A	A	P	E	D	I	A
Query Conservation																																																																							.
Alig confidence	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	T	Q	R	G	D	E	V	I	L	E	A	D	S	H	I	F	W	Y	E	V	G	A	M	A	V	L	S	G	V	M	P	H	P	V	P	G	K	N	G	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	D	D	V	R	K	A	I	R	P	R	N	I	H	F	P	R	T	S
Template Known Secondary structure	.	.	.			T	T							T	T						S	S	T	T						T											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S			S		T	T	S
Template Predicted Secondary structure	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	P	L	A	G	V	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	I	A	I	E	N	T	H	N	R	S	G	G	R	V	V	P	L	E	N	I	K	E	I	C	T	I	A	K	E	H	G	I	N	V	H	I	D	G	A	R	I	F	N	A	S	I	A	S	G	V	P	V	K	E	Y	A	G	Y	A	D	S	V	M	F	C	L	S	G	L	C	A	P	V	G	S	V	V	V	G
Template Known Secondary structure						S	S	B	T	T	T	T	S	B																		T								T	T																		T		S												S	S
Template Predicted Secondary structure
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E
Query Conservation
Alig confidence																																																										.	.	.
Template Conservation																																																										.	.	.
Template Sequence	D	R	D	F	I	E	R	A	R	K	A	R	K	M	L	G	G	G	M	R	Q	A	G	V	L	A	A	A	G	I	I	A	L	T	K	M	V	D	R	L	K	E	D	H	E	N	A	R	F	L	A	L	K	L	K	E	I	.	.	.	G	Y	S	V	N	P	E	D	V	K	T	N	M	V	I	L	R	T	D	N
Template Known Secondary structure																T				S	S	T														S	S	T	T																			.	.	.	T		B			G	G	G			S	S							T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

	362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.																				.	.
Template Conservation					.	.	.	.	.	.	.																				.	.
Template Sequence	L	K	V	N	.	.	.	.	.	.	.	A	H	G	F	I	E	A	L	R	N	S	G	V	L	A	N	A	V	S	.	.	D	T	E	I	R	L	V	T	H	K	D	V	S	R	N	D	I	E	E	A	L	N	I	F	E	K	L	F	R	K	F
Template Known Secondary structure	S	S	S		.	.	.	.	.	.	.												T								.	.	T	T								T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																				.	.
Template SS confidence
	289	290	.	.								.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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