Job Description P22256 Confidence 99.92% Date Thu Jan 5 11:38:48 GMT 2012 Rank 131 Aligned Residues 349 % Identity 13% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																			.	.																				.
Query SS confidence																			.	.																				.
Query Sequence		G	R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	.	.	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	.	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E
Query Conservation																			.	.																				.
Alig confidence																			.	.																				.
Template Conservation
Template Sequence		R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R
Template Known Secondary structure		G	G	G						S				B		T	T	S		B												T	S		G	G	G	T	S	S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A
Query Conservation
Alig confidence								.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	F	S	Y	.	.	.	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	V	Y	K	E	A	I	D	E	G	I	R
Template Known Secondary structure							T	.	.	.	S		S	S							S	S			T										T									B		S	S	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																		.	160	.	.	.	.	.	.	.	.	.	170	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.									260	.	.
Predicted Secondary structure																																					.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	.	.	.	.	.	.	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	.	.	.	.	.	.	.	.	A	P	D
Query Conservation																																					.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V
Template Known Secondary structure		S		S									S	S		T	T	T														T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		263	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure														.									.	.	.	.	.	.	.
Query SS confidence														.									.	.	.	.	.	.	.
Query Sequence		L	T	T	F	A	K	S	I	A	G	G	F	.	P	L	A	G	V	T	G	R	.	.	.	.	.	.	.	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G
Query Conservation														.									.	.	.	.	.	.	.
Alig confidence														.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R
Template Known Secondary structure										T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		335	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	L	A	I	A	E	K	H	.	.	.	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R
Query Conservation										.	.	.
Alig confidence										.	.	.																				.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template Sequence		A	D	V	F	V	T	A	A	K	E	N	K	L	T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	K	.	.	.	.	.	.	.	.	.	.	.	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	S	A	.	.	.	K	G	I	R	V	A	I	C	.	G	V	G	E	E	K	I	P
Template Known Secondary structure													T								S	S	S							S		.	.	.	.	.	.	.	.	.	.	.										T	T	T							S	.	.	.	S						S	T	.	T	S		T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.												.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	E	I	I	S	Q	C	F	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	V	Q	R	L	A	F	Y	T	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions