Job Description P22256 Confidence 99.92% Date Thu Jan 5 11:38:48 GMT 2012 Rank 125 Aligned Residues 353 % Identity 10% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		39	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure						.																.	.																.
Query SS confidence						.																.	.																.
Query Sequence		E	G	R	E	.	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	.	.	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	.	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A
Query Conservation						.																.	.																.
Alig confidence						.																.	.																.
Template Conservation
Template Sequence		N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G
Template Known Secondary structure				G	G	G						S	S			B		T	T	S		B												T								S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D
Query Conservation
Alig confidence										.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	H	L	I	H	N	Y	.	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	E	A	F	Q	N	R	V	N	E	L
Template Known Secondary structure										.	.	.	S		T	T							S	S			T									T	T								S	B		T	T	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																		160	.	.	.	.	.	.	.	.	.	170	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	.	.	.	.	.	.	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T
Template Known Secondary structure						S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																.									.	.	.	.	.	.	.																															.	.	.	.
Query SS confidence																.									.	.	.	.	.	.	.																															.	.	.	.
Query Sequence		P	D	L	T	T	F	A	K	S	I	A	G	G	F	.	P	L	A	G	V	T	G	R	.	.	.	.	.	.	.	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	.	.	.	.	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G
Query Conservation																.									.	.	.	.	.	.	.																															.	.	.	.
Alig confidence																.									.	.	.	.	.	.	.																															.	.	.	.
Template Conservation
Template Sequence		C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I
Template Known Secondary structure							S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template Sequence		R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	.	.	.	.	.	.	.	.	.	.	.	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	A	.	.	.	N	G	I	R	I	A	A	C	.	G	I	P	K	C
Template Known Secondary structure																T								S	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.											T	T							S	.	.	.	S						G	G	.	G	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.									.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.												.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.		.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L	G	K
Template Known Secondary structure				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions