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Job DescriptionP22256
Confidence99.95%DateThu Jan 5 11:38:48 GMT 2012
Rank78Aligned Residues356
% Identity12%Templatec3nraA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.. .......80.........90.........100. ........110..
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Query Sequence  DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK. . LSHTCFQVLAYEPYLELCEIMNQKVPGDF. . AKKTLLVTTGS
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Template Sequence  APIEGRPVDFSHG. . DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQ
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   34.....40...... ...50.........60.........70.........80.........90.........100.........110.
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  EAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK
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Template Sequence  GALFLAVAA. . . TVARGDKVAIVQPDYFANRKLVEFFEGEXVPVQLDYVSADETRAGL. . . . . . . . . . . . DLTGLEEAFK
Template Known Secondary structure  T...T

TT
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   112.......120 .........130.........140.........150.........160...... ...170......
 
   193......200.........210.........220.........230.........240.........250.........260.. .....
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Query Sequence  NDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD. . . . . LTTFA
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Template Sequence  . . . . . AGARVFLFSNPNNPAG. VVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIXGP
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   177..180.........190.. .......200.........210.........220.........230.........240.........250
 
   268.270.... .....280.........290.........300.........310.........320.........330.........340......
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Query Sequence  KSIAGGF. PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIG
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Template Sequence  STESLSGYRLGVAFGSRAIIARXEKLQAIVSLRAAGYSQAVLRGWFD. . EAPGWXEDRIARHQAIRDELLHVLRGEGVFA
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GGGGGTT
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   251........260.........270.........280.........290....... ..300.........310.........320........
 
   347..350.........360.........370.........380.........390... ......400.........410.........420..
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Query Sequence  DVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY. . . . YNVLRILVPLTIEDAQIRQGLEIISQCFD
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Template Sequence  RTPQAGSYLFPRLPKLAVAP. . . . . . AEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS. . QDHEAAVAAARRIVTLVE
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SBSS

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   331........340.........350 .........360.........370.........380.... .....390.........400..
 
   423..
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Query Sequence  EAK
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Template Sequence  RYR
Template Known Secondary structure  B
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   403..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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