Job Description P22256 Confidence 99.97% Date Thu Jan 5 11:38:48 GMT 2012 Rank 47 Aligned Residues 339 % Identity 13% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	E	G	R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		D	I	D	P	N	G	L	L	E	Y	S	V	V	Y	T	D	R	A	L	N	H	X	S	K	A	F	Q	E	V	X	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	S	N	L	K	T	V	Y	N	A	.	.	E	A	A	V	I	I	P	G	S	G	T	Y	G	X	E
Template Known Secondary structure				S	T	T	S						S	S			T	T	S			T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T		.	.	S							S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																					.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A
Query Conservation
Alig confidence									.	.	.																																																			.	.	.	.	.	.													.	.
Template Conservation									.	.	.																																																			.	.	.	.	.	.													.	.
Template Sequence		A	V	A	R	Q	L	T	.	.	.	I	D	E	D	C	L	I	I	R	N	G	W	F	S	Y	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E	A	P	K	P	F	A	P	V	.	.	.	.	.	.	D	I	E	T	A	V	A	K	I	K	E	D	.	.
Template Known Secondary structure									.	.	.	T	T									S																S	S										S	S			S	S								.	.	.	.	.	.													.	.
Template Predicted Secondary structure									.	.	.																																																			.	.	.	.	.	.													.	.
Template SS confidence
		65	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	P	L
Query Conservation
Alig confidence		.	.																.																														.	.	.	.																											.
Template Conservation		.	.																.																														.	.	.	.																											.
Template Sequence		.	.	K	S	A	I	V	Y	A	P	H	V	E	T	S	S	G	.	I	I	L	S	E	E	Y	I	K	A	L	S	E	A	V	H	S	V	G	G	L	L	V	I	D	C	I	A	S	.	.	.	.	G	C	V	W	L	D	X	K	E	L	G	I	D	V	L	I	S	A	P	Q	G	W	S	S	T	P	.	C	A
Template Known Secondary structure		.	.	T		S						S			T	T	T	T	.																		T	T								T	T		.	.	.	.	T	T									T		S											S			.
Template Predicted Secondary structure		.	.																.																														.	.	.	.																											.
Template SS confidence
				134	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.																							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	V	X	L	S	A	A	A	I	K	K	V	E	S	T	E	S	N	C	F	S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X	P	T	D	S	L	R	Q	F	R	D	A	I	L	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V
Template Known Secondary structure																T				S		S	T	T														T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.								390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	.	.	.	.	.	.	.	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	D
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		R	K	V	L	T	D	K	G	I	E	S	V	A	A	E	G	F	E	A	P	G	V	V	V	S	Y	T	E	R	D	.	.	.	.	.	.	.	.	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D	K	L
Template Known Secondary structure								T	T			B	S	B		T	T		B		S	S							S			.	.	.	.	.	.	.	.				S	S						T	T										S	S				T	T										S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.									.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	I	D	G	T	V	E	R	F	E	K	A	L	D	E	V
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions