Job Description P22256 Confidence 99.92% Date Thu Jan 5 11:38:48 GMT 2012 Rank 130 Aligned Residues 340 % Identity 13% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																		.	.																	.	.																										.						.	.
Query SS confidence																		.	.																	.	.																										.						.	.
Query Sequence		L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	.	.	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	.	.	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	.	F	A	K	K	T	.	.	L	L	V	T	T	G	S	E	A	V	E
Query Conservation																		.	.																	.	.																										.						.	.
Alig confidence																		.	.																	.	.																										.						.	.
Template Conservation
Template Sequence		I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F
Template Known Secondary structure					S		S	S		B		T	T	S	S	B																								T	T	S	S															S	S		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A
Query Conservation
Alig confidence													.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation													.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		V	L	L	E	F	L	K	M	L	N	V	.	.	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	D	L	F	L	N	D	L	R	N	I	.	.
Template Known Secondary structure									T	T	T		.	.							S	S											T	T	T											T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	.	.
Template Predicted Secondary structure													.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																	160	.	.	.	.	.	.	.	.	.	170	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.								.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.
Query Sequence		P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	.	.	.	.	.	.	.	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S
Query Conservation																																																											.	.	.	.	.	.	.
Alig confidence		.																																																									.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N
Template Known Secondary structure		.		S	S								S	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		270	.		.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure				.												.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence				.												.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		I	A	.	G	G	F	P	L	A	G	V	T	G	R	.	.	.	.	.	.	.	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	.	.	.	.	.	.	.	.	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D
Query Conservation				.												.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence				.												.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I	L	F	F	N
Template Known Secondary structure		S			T	T	T	T									S	S																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		334	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		G	L	L	A	I	A	E	K	H	P	E	I	G	D	.	.	.	.	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.						.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.						.
Template Sequence		K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	R	I	N	V	S	.	G	I	T	K	N	N
Template Known Secondary structure							G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.	.	.				G	G	.	G			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.						.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.														.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.							380	.	.	.	.		.	.	.	.	.	390
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	Y	I	A	D	K	I	C	L	S	L	S	Q	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions