Job Description P22256 Confidence 99.93% Date Thu Jan 5 11:38:48 GMT 2012 Rank 123 Aligned Residues 343 % Identity 11% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																			.	.																															.
Query SS confidence																																			.	.																															.
Query Sequence		A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	.	.	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A	R	A	A	T	.	K	R	S	G	T	I	A	F	S	G	A	Y	H	G
Query Conservation																																			.	.																															.
Alig confidence																					.														.	.																															.
Template Conservation																					.
Template Sequence		E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	.	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P
Template Known Secondary structure																		S			.														T	T	T					G	G	G					S	S																	G	G	G	S								S			T
Template Predicted Secondary structure																					.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Sequence		L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	.	Q	V	Q	S	R	K
Template Known Secondary structure										T	T									B	G	G	G	T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T	S									S	S		T	T	T		.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.																	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250														.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	.	.	G	G	F	P	L	A	G	V	T	G	R	A	E	V
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H
Template Known Secondary structure														T								T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.											.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																																							.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.																																							.
Query Sequence		M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	.	.	.	.	.	.	.	.	.	.	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	.	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.																																							.
Alig confidence																																.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation
Template Sequence		P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y
Template Known Secondary structure															S															T					T	T	S	T	T																												T	S	T	T								B	S	S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		355	.	.	.	.	360	.	.	.	.	.	.	.						.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.						.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																												.	.	.	.	.
Query SS confidence															.	.	.	.	.																												.	.	.	.	.
Query Sequence		I	A	I	E	L	F	E	D	G	D	H	N	K	.	.	.	.	.	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	.	.	.	.	.	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation															.	.	.	.	.																												.	.	.	.	.
Alig confidence															.	.	.	.	.																												.	.	.	.	.									.	.
Template Conservation																																																												.	.
Template Sequence		A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	.	.	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N	F
Template Known Secondary structure																			T	T	S																B					G	G	G	T				T	T			B							.	.	S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		425	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		519	520

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions