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Job DescriptionP22256
Confidence99.90%DateThu Jan 5 11:38:48 GMT 2012
Rank168Aligned Residues351
% Identity13%Templatec3hbxB_
PDB info PDB header:lyaseChain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana
Resolution2.67 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.. .......80.........90.........100..... ....110...
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Query Sequence  EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK. LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKT. . . . LLVTTGSE
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Template Sequence  DGNPRLNLASF. . . . VTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSE
Template Known Secondary structure  S

GGGBTT

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TTT
BTT
TTT
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   53......60... ......70.........80.........90.........100.........110.........120........
 
   114.....120.... .....130.........140.........150.........160.........170.........180...
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Query Sequence  AVENAVKIARA. . . . . . . . . . ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDA
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Template Sequence  AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVM. . . . . . . . . . . . . . . . . D
Template Known Secondary structure  TT


S

TT

TT


BTTB
S
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   129130.........140.........150.........160.........170.........180.........190 .
 
   184.....190.........200.........210.........220.........230.. .......240.... .....250...
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Query Sequence  IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH. . . . . . GIMLIADEVQSG. . . . AGRTGTLFA
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Template Sequence  PQQAVDMVD. . . . . ENTICVAAILGSTLNGEFED. . . . VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD
Template Known Secondary structure 

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TTT

B

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TTGGGT
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   192.......200 .........210.........220 .........230.........240.........250.........260..
 
   254.....260.........270.........280.........290...... ...300.........310.........320...
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Query Sequence  MEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGG. . . . . . . . . . TYAGNPIACVAALEVLKVFEQENLLQK
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Template Sequence  FRLPLVKSINVSGHYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNV
Template Known Secondary structure  TTSTT






SS
SSGGGS
GGG

SSSS


S

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BS
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   263......270.........280.........290.........300.........310.........320.........330.........340..
 
   324.....330.........340........ .350.........360.........370.........380........ .390......
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Query Sequence  ANDLGQKLKDGLLAIAEKHPEIGDV. . RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILL. . . . . SCGPYYNV
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Template Sequence  MENCREN. MIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHT. . . . . . EFEISDMLRRYGWIVPAYTMPPNAQHITV
Template Known Secondary structure  .TTT

S
SSSSSSS
SS

......TTT
B



TT
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   344.....350 .........360.........370.........380....... ..390.........400.........410......
 
   397..400.........410.........420......
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Query Sequence  LRILVPLTIEDAQIRQGLEIISQCFDEAKQ
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Template Sequence  LRVVIREDFSRTLAERLVIDIEKVMRELDE
Template Known Secondary structure 

TT

T
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   417..420.........430.........440......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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