Job Description P22256 Confidence 99.82% Date Thu Jan 5 11:38:48 GMT 2012 Rank 211 Aligned Residues 345 % Identity 14% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																.														.	.	.	.	.	.
Query SS confidence																																.														.	.	.	.	.	.
Query Sequence		R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	.	K	K	L	S	H	T	C	F	Q	V	L	A	Y	.	.	.	.	.	.	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E
Query Conservation																																.														.	.	.	.	.	.
Alig confidence											.	.					.	.	.													.														.	.	.	.	.	.																		.
Template Conservation											.	.					.	.	.																																																		.
Template Sequence		R	D	T	L	E	M	I	A	S	.	.	E	N	F	V	.	.	.	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	.	E	F	A	N	V	Q	P	H	S	G	A	Q
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					T		.	S							S	S
Template Predicted Secondary structure											.	.					.	.	.																																																		.
Template SS confidence
		24	.	.	.	.	.	30	.	.			.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N
Query Conservation
Alig confidence											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	A	A	V	L	H	A	L	.	.	.	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	D	M	D	A	V	R	A	T	A	L	E
Template Known Secondary structure											.	.	.			T	T								G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T		T	T	S					S	S									T	T	T		S
Template Predicted Secondary structure											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G
Query Conservation
Alig confidence			.	.	.																		.	.	.	.	.	.	.
Template Conservation			.	.	.																		.	.	.	.	.	.	.
Template Sequence		F	.	.	.	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	D	.	.	.	.	.	.	.	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H	A	D	V	V	S	T	T	V	H	T	L	G	G	G	R
Template Known Secondary structure			.	.	.			S							S	S			S				.	.	.	.	.	.	.												T								T	T	T						T	T	S	S			S	T	T	T		S													S
Template Predicted Secondary structure			.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		163				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		F	P	L	A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	.	.	.	.	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R
Query Conservation																																														.	.	.	.
Alig confidence			.	.																																										.	.	.	.
Template Conservation			.	.
Template Sequence		S	.	.	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S
Template Known Secondary structure			.	.							G	G	G									T	T	T	T		S	S																	T	S																						S	S						T	T				G	G
Template Predicted Secondary structure			.	.
Template SS confidence
		234			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.									390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.
Predicted Secondary structure			.	.																																								.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence			.	.																																								.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		G	.	.	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	.	.	.	.	.	.	.	.	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	E	.	.	.	.	D	A	Q	I	R	Q	G	L	E
Query Conservation			.	.																																								.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence			.	.																	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		G	G	T	D	V	H	L	V	L	V	D	L	R	D	S	P	L	D	G	.	.	.	.	.	.	.	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D
Template Known Secondary structure		G	S		S	S	S							T	T	S	S				.	.	.	.	.	.	.										T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330								.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		416	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	S	Q	C	F	D	E	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	A	T	A	L	A	T	G	S
Template Known Secondary structure									S	G	G
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions