Job Description P22256 Confidence 99.94% Date Thu Jan 5 11:38:48 GMT 2012 Rank 109 Aligned Residues 345 % Identity 12% Template c3eleB_ PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution Resolution 2.10 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.																										.
Query SS confidence																																			.	.	.	.	.																										.
Query Sequence		Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	.	.	.	.	.	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	.	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E
Query Conservation																																			.	.	.	.	.																										.
Alig confidence															.	.	.																		.	.	.	.	.																										.
Template Conservation															.	.	.
Template Sequence		V	Y	D	F	S	I	G	N	P	S	I	P	A	.	.	.	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S
Template Known Secondary structure												S			.	.	.															S							S				T	T																							G	G	G					S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A
Query Conservation
Alig confidence								.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation								.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		I	C	F	R	A	L	.	.	T	S	D	A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	D	A	L	E	E	R	I	N	.	.	.	.
Template Known Secondary structure								.	.			S	T	T							S	S			T	T								T	T										T	T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T			.	.	.	.
Template Predicted Secondary structure								.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		113	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																		160	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.																		.	.
Query SS confidence																																							.	.	.	.	.	.																		.	.
Query Sequence		P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	.	.	.	.	.	.	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	.	.	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K
Query Conservation																																							.	.	.	.	.	.																		.	.
Alig confidence		.																	.																				.	.	.	.	.	.																		.	.
Template Conservation		.																	.
Template Sequence		.	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	.	T	V	Y	S	E	E	T	I	K	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	D	N	T	L	V	C	Y	S	Y	S	K
Template Known Secondary structure		.	T	T								S	S		T	T	T		.																							T	S									T	T	T	T		B		T	T						G	G	G	T		S	S							S	T	T
Template Predicted Secondary structure		.																	.
Template SS confidence
			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		269	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		S	I	A	.	G	G	F	P	L	A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	Y	A	A	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	G	Y	H	C	F
Template Known Secondary structure		T	S	S		G	G	G									T	T	S	T	T															T	T				S									T	T		T	T																							T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	.	.	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A	K
Query Conservation																																																	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																						.	.									.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		K	P	D	G	A	F	Y	X	F	V	K	A	L	E	D	D	S	.	.	.	.	.	.	.	.	.	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	G	C	P	G	W	V	R	I	S	Y	C	.	.	V	D	R	E	X	I	K	H	S	X	P	A	F	E	K	I	Y	K	K	Y	N
Template Known Secondary structure				S	B	S	S							S	S	S			.	.	.	.	.	.	.	.	.										T	T						G	G	G	G	T		T	T								.	.	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.										.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		426
Predicted Secondary structure
Query SS confidence
Query Sequence		Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		397

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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