Job Description P22256 Confidence 99.96% Date Thu Jan 5 11:38:48 GMT 2012 Rank 61 Aligned Residues 368 % Identity 15% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	H	P	I	F	A	D	R	A	E	N	C	R	V	W	D	V	E	G	R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D
Query Conservation
Alig confidence																															.	.						.																										.
Template Conservation																															.	.						.																										.
Template Sequence		Y	D	F	T	H	V	P	K	R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	W	I	A	.	.	E	X	D	F	K	.	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	P	A	.	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R
Template Known Secondary structure		S			S	S						T	T		T	T	T	T	T			T	T						S	S	.	.			S	S		.														T	T											.															S
Template Predicted Secondary structure																															.	.						.																										.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S
Query Conservation		.
Alig confidence		.																							.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	.	.	.	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K
Template Known Secondary structure				G	G	G					S														.	.	.	S		T	T							S	S			T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T												T	T
Template Predicted Secondary structure																									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																.	.	.	.																	.																																											.	.	.
Template Conservation																.	.	.	.																	.
Template Sequence		Y	S	V	N	W	A	D	L	E	E	K	L	A	T	.	.	.	.	P	S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	.	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D
Template Known Secondary structure														T	S	.	.	.	.	T	T								S	S	B	T	T	T	T	.	B																	T	T								T	T	G	G	G	B		S	S						G	G	G	S
Template Predicted Secondary structure																.	.	.	.																	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
				257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.																			.
Query SS confidence		.	.																			.
Query Sequence		.	.	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	.	P	L	A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D
Query Conservation		.	.																			.
Alig confidence		.	.																			.
Template Conservation
Template Sequence		W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A
Template Known Secondary structure		T	T	G	G	G	G											S		G	G	G									S															T		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure											.	.																																										.												.	.	.	.
Query SS confidence											.	.																																										.												.	.	.	.
Query Sequence		G	L	L	A	I	A	E	K	H	.	.	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	.	G	L	I	L	L	S	C	G	P	Y	Y	.	.	.	.	N	V	L	R	I	L	V	P	L	T	I	E
Query Conservation											.	.																																										.												.	.	.	.
Alig confidence											.	.																								.	.	.	.	.	.	.												.												.	.	.	.									.	.
Template Conservation																																				.	.	.	.	.	.	.																																				.	.
Template Sequence		Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	.	.	.	.	.	.	.	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	.	.	C	P
Template Known Secondary structure												T	T	S						S	B	S	S							G	G	G		S		.	.	.	.	.	.	.																			G	G	G	G		T	T	G	G	G								.	.	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																				.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N	L
Template Known Secondary structure																		T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions