Job Description P22256 Confidence 99.92% Date Thu Jan 5 11:38:48 GMT 2012 Rank 132 Aligned Residues 339 % Identity 12% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence		E	G	R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	.	.	.	.	.	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E
Query Conservation																																													.	.	.	.	.
Alig confidence												.	.	.	.	.	.																												.	.	.	.	.																				.
Template Conservation												.	.	.	.	.	.																																																				.
Template Sequence		D	G	W	V	H	F	D	A	P	A	.	.	.	.	.	.	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	.	P	G	G	V	V	L	G	A	D	R	A	V
Template Known Secondary structure		S	S					B	G	G	G	.	.	.	.	.	.																					S	S	S		S	S	S																						T			.	G	G	G					S
Template Predicted Secondary structure												.	.	.	.	.	.																																																				.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	.	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K
Query Conservation																																				.
Alig confidence																																				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	W	Q	W	E	S	L	I	S
Template Known Secondary structure										T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.															.	.	.	.	150	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G
Query Conservation
Alig confidence		.	.	.	.	.																					.	.	.	.																														.	.	.
Template Conservation		.	.	.	.	.																					.	.	.	.																														.	.	.
Template Sequence		.	.	.	.	.	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	.	.	.	.	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	.	.	.	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P
Template Known Secondary structure		.	.	.	.	.	T	T								S	B		T	T	T		B	B			.	.	.	.											T	T								T	T	T	T	T	T					.	.	.							S						G	G	G	G	T	S
Template Predicted Secondary structure		.	.	.	.	.																					.	.	.	.																														.	.	.
Template SS confidence
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.														.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	P	L	A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	.	.	.	.	.	.	.	.	.	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K
Query Conservation																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		P	I	G	.	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R
Template Known Secondary structure		S			.					S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure					.
Template SS confidence
		224	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.												.	.	.
Predicted Secondary structure																.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	D	G	L	L	A	I	A	E	K	H	P	E	.	.	.	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	.	.	.	.	.	.	.	.	.	.	.	Y	N	V
Query Conservation																.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	.	.	.	.	.	.	.	.	.	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A
Template Known Secondary structure												T		T	T								S	S	B		S							T	T	B			.	.	.	.	.	.	.	.	.										T	T								S								T	T	T	T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.										340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S	L
Template Known Secondary structure								T	T															T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions