Job Description P22256 Confidence 99.91% Date Thu Jan 5 11:38:48 GMT 2012 Rank 144 Aligned Residues 333 % Identity 13% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																			.	.																											.	.
Query SS confidence																																			.	.																											.	.
Query Sequence		G	R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	.	.	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	.	.	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V
Query Conservation																																			.	.																											.	.
Alig confidence												.	.	.																					.	.																											.	.
Template Conservation												.	.	.
Template Sequence		Q	H	T	V	I	N	L	S	I	G	.	.	.	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L
Template Known Secondary structure		T	S						S	S		.	.	.																						T	S	S	S								T	T												T	T	S	T	T	S	S		G	G	G					S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A
Query Conservation
Alig confidence									.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	L	L	S	F	F	.	.	.	.	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N	A	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	F	P
Template Known Secondary structure									.	.	.	.		S	S								S												T	T		S									G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																										.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	.	.	.	.	.	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I
Query Conservation																																																												.	.	.	.	.
Alig confidence																				.																																								.	.	.	.	.
Template Conservation																				.
Template Sequence		E	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	.	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S	K	P	L
Template Known Secondary structure		T	T				S						S	S		T	T	T		.																		T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T									G	G	G
Template Predicted Secondary structure																				.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		271	.	.	.		.	.	.	.	.	280	.	.	.	.									.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure						.											.	.	.	.	.	.	.	.
Query SS confidence						.											.	.	.	.	.	.	.	.
Query Sequence		A	G	G	F	.	P	L	A	G	V	T	G	R	A	E	.	.	.	.	.	.	.	.	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K
Query Conservation						.											.	.	.	.	.	.	.	.
Alig confidence						.											.	.	.	.	.	.	.	.																																																							.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	T	.	.	.
Template Known Secondary structure		T	T	T	T										T	T		B		T	T	S		B																															T	T	T																					T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																												.											.	.	.	.
Query SS confidence																																												.											.	.	.	.
Query Sequence		H	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	.	G	L	I	L	L	S	C	G	P	Y	.	.	.	.	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I
Query Conservation																																												.											.	.	.	.
Alig confidence		.																									.	.	.	.	.	.	.											.											.	.	.	.										.	.
Template Conservation		.																									.	.	.	.	.	.	.																																			.	.
Template Sequence		.	G	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	.	.	.	.	.	.	.	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	S	S	L	.	.	G	K	R	E	D	I	L	A	A	C	E	R
Template Known Secondary structure		.	T							S	S	S	S									T	T			T	.	.	.	.	.	.	.	T	T										S						G	G	G	G		G	G	G	T	T								.	.	S
Template Predicted Secondary structure		.																									.	.	.	.	.	.	.																																			.	.
Template SS confidence
			316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.
		417	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		386	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions